QUBES - Introduction to Quantitative Biology at William and Mary: Collections

How statistics lost their power – and why we should fear what comes next

https://www.theguardian.com/politics/2017/jan/19/crisis-of-statistics-big-data-democracy external link

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Drew LaMar onto Primary and news articles
@ 3:08 pm on 19 Jan 2017

Chemical Reaction Networks

https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=caa1ad45-fe03-41a2-9fe2-a5a38a517544 external link

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@ 12:16 pm on 28 Nov 2016

Introduction to Systems Biology (cont'd)

11_18_Slides.zip 499 KB
http://rpubs.com/mdlama/228943 external link
https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9392df74-e337-41c5-9b0d-f9109dbc4f7e external link

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@ 6:53 am on 21 Nov 2016

Discrete Maps: The Logistic Model

https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=eb738f8c-049b-4b6d-a0c6-0c8cb62cbad7 external link

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@ 12:48 pm on 18 Nov 2016

Introduction to Systems Biology

11_16_Slides.pdf 6 MB
11_16_Slides.zip 6 MB
http://rpubs.com/mdlama/228313 external link
https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=de839f39-e004-4443-b333-766605b8e0ff external link

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@ 12:41 pm on 18 Nov 2016

From Agent-Based to Population Models: Logistic Growth (Part 3)

https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5539c2ba-62e7-4046-890d-0de7bfd91fcd external link
SelectionLab.ipynb 11 KB

Lecture

Selection Lab

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@ 3:04 pm on 11 Nov 2016

From Agent-Based to Population Models: Logistic Growth (Part 2)

https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f04b1bce-10f9-4051-b8a1-fbed9a3dc8d6 external link

Lecture

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@ 3:01 pm on 11 Nov 2016

From Agent-Based to Population Models: Logistic Growth (Part 1)

https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2f007ec4-0087-4789-bd18-e160c154b6ce external link

Lecture

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@ 2:59 pm on 11 Nov 2016

Natural Selection

http://rpubs.com/mdlama/223485 external link
10_31_Slides.zip 257 KB
https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=c2549ecd-f11b-4951-a9c6-0c43406ade71 external link

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@ 12:23 pm on 01 Nov 2016

Population Genetics

10_26_Slides.zip 849 KB
10_26_Slides.html 17 MB
https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ddcf7a3-1c71-4dc7-9c13-2e37874bb673 external link

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@ 6:47 am on 28 Oct 2016

In Silico Experimentation (cont'd)

10_24_Slides.zip 722 KB
10_24_Slides.pdf 525 KB
http://rpubs.com/mdlama/221582 external link
https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c145f1-c310-4fcf-befd-a9ccaadb55d8 external link

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@ 10:30 am on 25 Oct 2016

In Silico Experimentation

10_21_Slides.pdf 400 KB
10_21_Slides.zip 1 MB
http://rpubs.com/mdlama/220852 external link
https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=00d273c7-f129-49c4-b3e1-c7054e04ed12 external link

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@ 3:49 pm on 22 Oct 2016

Prey-foraging: The collective search or lone-wolf approach?

http://phys.org/news/2016-10-prey-foraging-lone-wolf-approach.html external link
http://dx.doi.org/10.1371/journal.pcbi.1005147 external link

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Drew LaMar onto Primary and news articles
@ 3:43 pm on 22 Oct 2016

Testing your program (cont'd)

https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=112c86cb-8960-413d-9a95-14a9f68110ef external link
10_19_Slides.pdf 321 KB
10_19_Slides.zip 64 KB
ButterflyModel_Ch4_SubmodelOutputEx.nlogo 17 KB
ButterflyModel_Ch4_FileOutputEx.nlogo 17 KB
http://www.rpubs.com/mdlama/220496 external link

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@ 6:30 am on 21 Oct 2016

Using mathematical modeling to improve blood sugar estimates

https://www.nih.gov/news-events/nih-research-matters/improving-blood-sugar-estimates external link
http://stm.sciencemag.org/content/8/359/359ra130.full external link

Full paper: "Mechanistic modeling of hemoglobin glycation and red blood cell kinetics enables personalized diabetes monitoring"

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Drew LaMar onto Primary and news articles
@ 11:16 am on 18 Oct 2016

Testing your program

10_17_Slides.zip 535 KB
10_17_Slides.pdf 918 KB
http://rpubs.com/mdlama/219648 external link
TestProgram.nlogo 12 KB

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@ 6:20 am on 18 Oct 2016

Implementing and Testing an Agent-Based Model

10_14_Slides.zip 201 KB
10_14_Slides.pdf 437 KB
http://rpubs.com/mdlama/218861 external link
https://wmedu.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fda525da-be84-4466-9f90-f893c4cac1fd external link

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@ 8:17 am on 15 Oct 2016

Dryad Digital Repository

https://datadryad.org/ external link

The Dryad Digital Repository is a curated resource that makes the data underlying scientific publications discoverable, freely reusable, and citable. Dryad provides a general-purpose home for a wide diversity of datatypes.

database

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Drew LaMar onto Data Repositories
@ 4:38 pm on 13 Oct 2016

Quandl

https://www.quandl.com/collections external link

Contains large datasets on many topics including demography, environment, and health.

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Drew LaMar onto Data Repositories
@ 4:32 pm on 13 Oct 2016

Long Term Ecological Research (LTER) Network

https://portal.lternet.edu/nis/home.jsp external link

The LTER Network Information System Data Portal contains ecological data packages contributed by past and present LTER sites. Please review the LTER Data Policy before downloading any data product. We request that you cite data sources in your published and unpublished works whenever possible. Digital object identifiers (DOI) are provided for each dataset to facilitate citation.

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Drew LaMar onto Data Repositories
@ 4:27 pm on 13 Oct 2016