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A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
28 Feb 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
Adaptation of Investigating human impacts on stream ecology: locally and nationally
10 Jun 2019 | Teaching Materials | Contributor(s):
By Catherine Sughrue Etter
Cape Cod Community College
TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally?
Agent-Based Modeling Course Materials
29 Jan 2019 | Teaching Materials | Contributor(s):
By Erin N. Bodine
Materials created for an upper level ABM course. Prerequisite: Students have taken either (a) another modeling course, or (b) the introductory computer science sequence.
An Introduction to Statistical Learning: with Applications in R
23 Oct 2018 | Teaching Materials | Contributor(s):
By Gareth James1, Daniela Witten2, Trevor Hastie3, Robert Tibshirani3
1. University of Southern California 2. University of Washington 3. Stanford University
This book provides an introduction to statistical learning methods and is aimed for upper level undergraduate students, masters students and Ph.D. students in the non-mathematical sciences.
03 Oct 2018 | Teaching Materials | Contributor(s):
By Arietta Fleming-Davies1, Jeremy M Wojdak2
1. University of San Diego 2. Radford University
This activity provides students with a set of strategies they can use to check their own answers in their biology and other courses. Students practice the answer checking strategies on a series of...
Answer Checking - Modified for Environmental Data Analysis/Statistics Course
06 Jun 2019 | Teaching Materials | Contributor(s):
By Jennifer Prairie
University of San Diego
Modified answer checking worksheet from original BIOMAAP resource to include two additional questions relating to probability/P-values.
25 Jul 2018 | Teaching Materials | Contributor(s):
By Kelly O'Donnell
This video explores what artificial intelligence is and features people who work on different aspects of intelligence. How do we make machines that think like humans? How can we tell when we’ve...
Asking and Answering Questions: ADW’s Flexible Querying Tool
15 Aug 2017 | Teaching Materials | Contributor(s):
By Tanya Dewey1, Phil Myers2, Roger Espinosa2, Tricia Jones2, George Hammond2
1. Colorado State University and the Animal Diversity Web (animaldiversity.org) 2. Animal Diversity Web
Presentation made by Tanya Dewey et al. as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America...
This can be given at the beginning and end of the BIOMAAP program, in order to measure student changes in math anxiety.
Assessment of Science Inquiry
17 Jan 2018 | Teaching Materials | Contributor(s):
By Sabra Lee, George Hein
Resource from the 2015 BioQUEST Summer Workshop
Avida-ED Lab Book Summer 2017
out of 5 stars
27 Jul 2017 | | Contributor(s):: Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser
The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection)
Bioinformatics - Investigating Sequence Similarity
31 Jan 2017 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Komal Vig3
1. Adams State University 2. Hampshire College 3. Alabama State University
This laboratory module, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
Bioinformatics: An Interactive Introduction to NCBI
03 Jan 2019 | Teaching Materials | Contributor(s):
By Seth Bordenstein
Marine Biological Laboratory
Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide...
Bioinformatics: CpG Islands
17 Oct 2017 | Teaching Materials | Contributor(s):
By Edward Himelblau
California Polytechnic State University
This is an introductory bioinformatics exercise intended for use in a genetics course.
Bioinformatics: Investigating Sequence Similarity - A Plant Biology Approach
29 May 2019 | Teaching Materials | Contributor(s):
By Ami Erickson
This laboratory module is a modification of the original published on CourseSource with a focus on plant biology. In the final activity, students conduct a BLAST to compare histone protein...
Changes in Lake Ice: Ecosystem Response to Global Change
23 Jun 2017 | Teaching Materials | Contributor(s):
By Cynthia Tant
This is an FMN participant modification of the TIEE module "Changes in Lake Ice: Ecosystem Responses to Global Change," authored by Robert Bohanan, Marianne Krasny, and Adam Welman in 2005.
Competition under the Sea: Exploring the competitive interaction between native and non-native seagrasses in the Caribbean
26 May 2019 | Teaching Materials | Contributor(s):
By Demian Alexander Willette
Loyola Marymount University
A mini-case study that uses real-world data to explore the competitive interaction among seagrasses.
Cystic Fibrosis Mechanism and Treatment
01 Jul 2019 | Teaching Materials | Contributor(s):
By HHMI BioInteractive
This animation shows how mutations in an ion channel protein lead to the genetic disease cystic fibrosis. The animation also discusses how research on this protein has been used to develop...
DNA Subway Learning Resources
16 Oct 2017 | Teaching Materials | Contributor(s):
By Jason Williams
Cold Spring Harbor Laboratory
DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.
Drug screening and cancer resistance: EGFR Activity
By Holly Basta
Rock Mountain College
This activity explores a specific gene (egfr) and its role in cancer. EGFR was introduced with the Gene Card Activities, researched throughout the semester, and then authentic image data of...