QUBES - Collections: Posts

Report on outcomes of NSF INCLUDES program. NSF INCLUDES (Inclusion across the Nation of Communities of Learners of Underrepresented Discoverers in Engineering and Science) is a comprehensive national initiative designed to enhance U.S. leadership in science, technology, engineering and mathematics (STEM) discoveries and innovations by focusing on diversity, inclusion and broadening participation in these fields at scale. The vision of NSF INCLUDES is to catalyze the STEM enterprise to collaboratively work for inclusive change, which will result in a STEM workforce that reflects the diversity of the Nation.

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Alycia Crall onto Publications
@ 3:35 pm on 09 Aug 2018

Keeping Data Science Broad Report

Keeping_Data_Science_Broad_Report.pdf 53 MB

A report summarizing a series of webinars and workshops to garner community input into pathways for keeping data science education broadly inclusive by bridging the digital and data divide among higher education institution types.

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Alycia Crall onto Publications
@ 3:29 pm on 09 Aug 2018

Brain Science Podcast

http://brainsciencepodcast.com/ link

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Jacob Shreckengost onto Resources for Teaching with Cases and PBL
@ 1:00 pm on 09 Aug 2018

Neurotoxins lists

Neurotoxins.doc 26 KB
neurotoxin-2.doc 80 KB

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Valerie K Haftel onto Resources for Teaching with Cases and PBL
@ 12:22 pm on 09 Aug 2018

High Content Q&A videos

https://www.thermofisher.com/us/en/home/life-science/cell-analysis/cellular-imaging/high-content-screening/hca-q-and-a.html

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Carlos C. Goller onto HT Cell imaging Collection
@ 10:17 am on 07 Aug 2018

Bioimage Informatics Activity - Julian, D. 2018

Julian, D. (2018). Bioimage Informatics Activity. HHMI BioInteractive FMN (2016), QUBES Educational Resources. doi:10.25334/Q49M6M
BibTex | EndNote

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Carlos C. Goller onto HT Cell imaging Collection
@ 9:20 am on 07 Aug 2018

Writing Case Notes

Writing_Case_Notes.docx 15 KB

Here is the description of what should be included in Case Notes

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Pat Marsteller onto Resources for Teaching with Cases and PBL
@ 4:29 pm on 06 Aug 2018

PB and Case Readings and References

PBL_and_Case_References.docx 45 KB

First documents has links to articles about cases and PBL including an annotated bibliography link!!

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Pat Marsteller onto Resources for Teaching with Cases and PBL
@ 3:06 pm on 06 Aug 2018

Materials for Writng a Case

design_products_2018NCN.docx 31 KB
Adapting_Cases_and_Writing_Cases1.pptx 18 MB
Writing_a_case.pdf 49 KB
Tips_for_Writing_Problems.pdf 23 KB
components_of_a_case_module.pdf 45 KB

The collection contains handouts and powerpoints about writing cases

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Pat Marsteller onto Resources for Teaching with Cases and PBL
@ 2:38 pm on 06 Aug 2018

DATASET Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

Dataset for case study

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Leigh Ann Samsa onto scRNAseq Analysis Resources
@ 5:29 pm on 24 Jul 2018

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

http://science.sciencemag.org/content/352/6282/189 link

Original paper for case study dataset.

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Leigh Ann Samsa onto scRNAseq Analysis Resources
@ 5:28 pm on 24 Jul 2018

Granatum

http://genomemedicine.biomedcentral.com/articles/10.1186/s13073-017-0492-3 link

GUI students will use to visualize data.

"Without a single line of programming code, users can click through the pipeline, setting parameters and visualizing results via the interactive graphical interface. Granatum conveniently walks users through various steps of scRNA-Seq analysis. It has a comprehensive list of modules, including plate merging and batch-effect removal, outlier-sample removal, gene-expression normalization, imputation, gene filtering, cell clustering, differential gene expression analysis, pathway/ontology enrichment analysis, protein network interaction visualization, and pseudo-time cell series construction." Zhu et al. Genome Medicine 9:108. doi:10.1186/s13073-017-0492-3

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Leigh Ann Samsa onto scRNAseq Analysis Resources
@ 5:21 pm on 24 Jul 2018