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BUGBOX mathematical modeling simulations

Simulations that  model  prey density with consumption by one predator as well as a population of an insect over time.  

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Instructor Notes and Supplemental Critical Analysis Activity -- Gaston College

Linked is a really neat .gif graph that shows temperature change over time. It is easy to interpret and helps supplement the phenology module.

Also attached is a supplemental activity (class discussion) that helps illuminate how some entities present real data in a biased fashion to convince the reader of specific views. Students work as a group to bias real data, engage in a class discussion, and find real examples of biased data in social media/current events.

 

Instructor's Notes:

This TIEE module was implemented over the course of two days in a lab setting for community college students enrolled in a major's biology course. I began with the pre-workshop excel graphing activity by Calinger, had students work on the module without modifications, and ended with my critical analysis supplemental activity attached above.

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Mathematical Manipulative Models: In Defense of “Beanbag Biology”

CBE Life Sci Educ. 2010 Fall; 9(3): 201–211.

doi:  10.1187/cbe.10-03-0040

Mathematical Manipulative Models: In Defense of “Beanbag Biology”

John R. Jungck,corresponding author* Holly Gaff, and Anton E. Weisstein

This paper discusses a number of experiential tools for improved quantitative understanding in the biology classroom.

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Gary Simundza demonstrates Experiential Learning

You tube video

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Faculty perceptions of a calculus reform experiment at a research university: A historical qualitative analysi

Explains a study done on calculus students to better understand how to shape their curriculum. 

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Population growth-exponential and logistic models vs. complex reality

Explains the ways that Exponential growth models and logistic models depict real world scenarios to students.

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University of California museum of paleontology

A project dedicated to helping students understand science. Explains how various elements of science works and how science is in everyday life. 

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Steady state vs. equilibrium in biology

Explains how a steady state system stays constant overtime. Also, explains how an equilibrium stays stable overtime. 

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Curriculum renewal across the first two years (CRAFTY).

Determines the mathematical needs of colleges. Also offers  a curriculum guide. Focuses on two key main points:

  • Determining  mathematical needs and priorities their partner disciplines by offering 22 weekend workshops.
  • Supporting mathematics departments to develop and offer an engaging  College Algebra courses.

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Transforming undergradaute education in biology: Mobilizing the community for change.

Its a vision to change Biology education through innovative ideas. The organization involved is the American Association for the Advancement in Science. They are searching for the best ways to teach biology.   

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I implemented the module as written, with very little modification.  I attached the files I used and shared with students, as well as examples of student posters that were completed as part of the project.

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Modified Bald Eagle Module at St. Norbert College

We completed this activity as part of our Earth Day celebration in one 60min lecture period in my Second Semester Majors Introductory Biology Course. The course had 5 sections of 20-24 students each.  We had already completed the HHMI Excel Tutorials and the TIEE Phenology and Climate Change Module in previous labs, so it was possible to complete the full guided activity (minus performing the regression analyses-we just used trend lines and R2 values) and have a short discussion in 60 min.

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Phenology and Climate Change Module as part of a 5 week long Migratory Bird Phenology Project at St. Norbert College

I incorporated the TIEE Phenology Module as part of a 4 lab period Phenology Project in my 2nd semester Majors Introductory Biology Course. The course had 5 sections each with 20-24 students; lab duration is 2 hours per week.

In the 1st lab I introduced the topic of phenology using the three video clips below and a brief introductory reading. I also introduced my Campus Migratory Bird Phenology Project where student groups collect migratory bird data on campus for 30min a week, for 5 weeks (handout and rubrics provided). Lastly we conducted the HHMI Excel Tutorials 1-3 to learn how to use Excel and how to make bar graphs.
1. https://www.youtube.com/watch?v=EfAcoDO5u4Y
2. https://www.youtube.com/watch?v=Kpp9NE1i2zM
3. http://climatewisconsin.org/story/phenology

In the 2nd and 3rd labs we learned how to make line and scatterplot graphs and how to perform and interpret a linear regression by adding a linear trend line using the posted ppt from James Vance on the Phenology Collections site, and we completed the TIEE activity. After the 3rd lab students were given a homework assignment to graph two given data sets appropriately and to properly interpret the regression output biologically and statistically (assignment, student data and faculty data key provided).

In the 4th lab (last lab session of the semester) student groups presented a 5-7min oral summary of their 5 Week Campus Migratory Bird Phenology Project to the rest of the class (presentation rubric provided)

 

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Phenology and climate change for non-science majors

I slightly modified the phenology lab for a general education biology course for non-science majors, removing the anomaly plot section to make it a little shorter. The lab (in two parts) was prefaced early in the semester by a short library research assignment and, later, a video from Climate Wisconsin. These briefly introduced the topic of phenology and the value of long-term phenophase data, as well as a variety of questions related to climate change. The lab was also coupled with independent student collection of phenophase data (Project Budburst) for a spring-active species on our campus. Finally, students were shown how to access and compare other data for their species available via the National Phenology Network.

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Implementation at Del Mar College

Instructor Notes and Classroom Materials used at Del Mar College.

This module was implemented in a section of BIOL 1407 (BIOLOGICAL CONCEPTS II - EVOLUTION, DIVERSITY, STRUCTURE, FUNCTION AND ENVIRONMENT)/ Lecture & Lab at Del Mar College, an independent community college. The course is intended for biology majors but may be taken as a science course for the core curriculum requirement.

 

The section in which this module was implemented was reserved for biology majors because it is part of Del Mar’s participation in the HHMI SEA-PHAGES program (seaphages.org).

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Instructor Notes and Classroom Materials used at Del Mar College

This module was implemented in two sections of BIOL 1407 (BIOLOGICAL CONCEPTS II - EVOLUTION, DIVERSITY, STRUCTURE, FUNCTION AND ENVIRONMENT)/ Lecture & Lab at Del Mar College, an independent community college. The course is intended for biology majors but may be taken as a science course for the core curriculum requirement.

 

Grisé’s class was a dual credit course with high school juniors and seniors. Overath’s class was a section reserved for biology majors because it is part of Del Mar’s participation in the HHMI SEA-PHAGES program (seaphages.org).

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7 Scientific Reasons a Zombie Outbreak Would Fail (Quickly)

A link to seven funny yet realistic reasons, why zombies would never be a true problem. 

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Profile picture of Madison Newton

Madison Newton onto Resources for Humans vs Zombies

Guided Student Version - question worksheet (condensed)

I used this module at the end of an introductory Principles of Wildlife Management course (the course has no quantitative component).  The module was used to apply wildlife management principles to a real world case study.  The MSWord file has student questions that were modified from the original Guided Version of the module. Changes were made to attempt to make the questions less wordy and to add a question focused on wildlife management. I used it with freshman students who needed guidance with graphing in Excel. The class lecture time is 1hr 15 min, and there is no lab time. 

  • Class 1 - Give an introduction to the module and Questions 1-3 were assigned as homework
  • Class 2 - Meet in computer lab, review and check for understanding, and do Questions 4-5.    If time allows, start the discussion questions 1-4, otherwise they are assigned for homework. 
  • Class 3 - Review the discussion questions.

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Materials adapted for online, nonmajors Environmental Science class

I adapted this module to a multi-week "research project" for my online, nonmajors Environmental Science course.  It involved LOTS of scaffolding, and taking things very slowly.  Along with these assignments, there were also three graded discussions.  I have posted the guidelines for these discussions below.

Online Graded Discussion 1:

Week 12 Instructions:

1. Let's do a little research.  Using the central question given to you in our Global Climate Change and Phenology Research Project: 

"Have long-term temperatures changed, and if so, how will these temperature changes impact plant and animal phenology, ecological interactions, and, as a result, species diversity?"

find and post at least ONE credible, reliable, objective, and valid resource (scholarly scientific article or webpage from a source that satisfies those adjectives) by 11:59pm Wed night.  In your post, summarize the main points or take home messages from the source you identified.  THEN, read through the other posts and before 11:59pm Sun night, comment on at least one additional post (i.e., a different reference than you posted), with a message that makes a connection between your posted source/reference or asks a meaningful question that facilitates discussion of material presented in that source/reference.

Online Graded Discussion 2:

View the temperature data attached to the Pinned Post.  Find your group's climate division, and compare it to other climate divisions as well as the statewide temperature trends.  

For your first post (by 11:59pm Wed night):

Describe how your group's assigned climate division compares to the other 9 climate divisions AND the statewide temperature data.  What conclusions would you come to based on your group's climate division data alone about temperature change in Ohio?  What conclusions do you come to when you consider all 10 climate divisions and the statewide averages?  

For your second post/reply (by 11:59pm Sun night): Reply to at least one classmate who posted about a DIFFERENT climate division than your group worked with.  Compare and contrast your temperature trends, and consider both their post, as well as your group's climate division, in the context of the statewide averages.  What value do we get by sharing, compiling, and collaborating to answer questions of climate change using more and more data from different areas?


Online Graded Discussion 3:

It's time to wrap up our research project!  

1. For your first post (by 11:59pm Wed night), please post a message describing:

a. one new thing that you learned about or learned to appreciate at a deeper level regarding climate change (and its impact on ecosystems).

b. one thing that you learned or skill you gained about scientific research (data analysis? graphing? working in a group? interpreting data?  something else?).

**You must post your initial message before you will be able to read and respond to other messages in the Discussion Topic.**

2. For your second post/reply (by 11:59pm Sun night):

Read through your classmates' posts and respond to at least ONE of your classmates' posts to extend/deepen the discussion on either the point regarding climate change/phenology OR conducting scientific research and data analysis.  Your comments should include your experiences/thoughts and discuss WHY it is important to understand these concepts and the scientific process in evaluating stories that are presented on the news, radio, newspapers, or online sources (including social media).

 

 


 

 

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Lab Report Rubric

I modified the lab report rubric to meet the needs of my course. I didn't care for the long report rubric and the short report didn't have quite enough.

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Pre-exercise powerpoint introduction

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Modified lab

I completed this module in the 3 hour laboratory section of my 2nd term biology for majors course; which focuses on ecology and evolution.

I've attached the modified version of the module that I used for my students, which excludes the temperature anomaly sections. We completed this module during a 3 hour lab towards the end of the quarter. Students worked in pairs.

Students already had experience using Microsoft Excel to make figures from previous labs. To facilitate the activities, I introduced the term phenology, and asked students to discuss why we should care about changes in phenology. Next, I reviewed independent and dependent variables, line graphs versus scatter plots (why we use different types of graphs for different types of data, and what the slope of a line actually tells us (an indicator of rate). I did this review informally as an interactive “chalk talk” on the white board; drawing figures on the board and asking students questions (and asking them to sketch out figures on the board) instead of doing a formal powerpoint talk.

I was happy with the shortened version of the lab, and I think it would have been too much for students to complete the entire, unabbreviated lab within a 3 hour period.

Students submitted their figures online, and turned in the lab handout the following week at the beginning of lab.

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Introduction of concepts for the module in Spanish and Student data sheet

I prepared an introduction to the module in Spanish.  It helped to engage students in the concepts presented in the module.  I also prepared a student data sheet.  I used all the other materials as presented in the module.  

I think this is a very good module.  I will use it again next semester in the Ecology laboratory.  I like the module because it helps understand the concept of scale, besides all the other objectives that the module have.  It also provide students with tools for data analysis.  ImageJ could be used for many other things.  I pointed that out the the students and they started thinking about other projects were the software might be useful.  

 

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Instructor Notes and Classroom Materials - D. S. Fernandez

This collection contains documents used for implementation of the module at University of Puerto Rico at Humacao (D. S. Fernandez).  The module was used in the General Ecology laboratory, as part of the syllabus, as a special assignment (Project).  Two lab sessions, plus the final report, were necessary for full implementation.  Students' handout and assignment are written in Spanish, but description and details about the implementation are published in English.

List of documents:

  1. Final Network Reflections and Implementation Notes
  2. Handout for Students (in Spanish)
  3. Spreadsheet with Temperature Data
  4. Assignment: Final Report (in Spanish)
  5. Spreadsheet with slope data
  6. Paper: Modelling Temperature and Precipitation for Puerto Rico during 21st Century

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implementation of lake ice module at Del Mar College

The module was completed during a 3 hour introductory biology lab. No changes were made to the module. 

instructor notes for implementation

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