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Assessing Socioeconomic Trends in Tree Cover and Human Health in Urban Environments

In this exercise, students use a combination of publicly available data and tree cover data that they generate using iTree Canopy to test whether tree cover is equitably distributed within the city of Dallas.

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Bernadette Marie Roche onto EJ

Integrating Social Justice into your STEM Classroom: Redlining & Health

Workshop about models for introducing social justice issues into classes developed in a Faculty Mentoring Network. Presented at the 2021 BIOME Institute.

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Bernadette Marie Roche onto EJ

Dei statments examples for syllabi and tenure and promotion links

Contains a few examples from web search

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Sarah Prescott onto Resources from Social Justice FMNs

guides for discussion

Contains a set of links to guidelines and topics about talking about race

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Sarah Prescott onto Resources from Social Justice FMNs

Racial Justice in Education Guidebook

Although aimed at K12...very useful guide

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Sarah Prescott onto Resources from Social Justice FMNs

America needs all of us

Guide to having discussions about race

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Sarah Prescott onto Resources from Social Justice FMNs

New York times learning network

This site has relevent materials for teachers and students on many topics.

An example is this link on talking about race...an on demand webinar

https://www.nytimes.com/2021/02/11/learning/on-demand-webinar-talking-about-race-and-racism-in-the-classroom-using-the-new-york-times.html

 

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Sarah Prescott onto Resources from Social Justice FMNs

Graphing and mapping patterns of air quality in Los Angeles, California through an environmental justice lens.

Air quality is an environmental issue that impacts everyone in Los Angeles. This activity presents current popular press articles about air pollution and environmental justice and maps and graphs PM pollution in Los Angeles.

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Spiders under the Influence

The curriculum module “Spiders under the Influence” was created by by Chris Hawn and Aaron Curry and is published as part of the Data Nuggets project.

Introduction: People use pharmaceutical drugs, personal care products, and other chemicals on a daily basis. For example, we take medicine when we are sick to feel better, and use perfumes and cologne to make ourselves smell good. After we use these chemicals, where do they go? Often, they get washed down our drains and end up in local waterways. Even our trash can contain these harmful chemicals. For example, when coffee grounds are thrown into the trash, caffeine gets washed into our waterways.

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Sam S Donovan onto CREEDS Workshop Curriculum Modules

Phenology Trends and Climate Change in Minnesota

The curriculum module “Phenology Trends and Climate Change in Minnesota” was developed by Pamela Freeman and is published as part of Project Eddie.

Summary: Seasonal events, for example flowering, fruiting, and the return of migrating birds, happen at particular times of the year. Some of these events happen in relation to climate, while others are dependent on other factors. Phenology is the study of these repeating events in the lifecycle of organisms. As the climate changes, the timing of some events may change in some species. This exercise will help students evaluate how climate change has already affected species in Minnesota.

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Graphing and Mapping Patterns of Air Quality in Los Angeles, California Through an Environmental Justice Lens

The curriculum module “Graphing and Mapping Patterns of Air Quality in Los Angeles, California Through an Environmental Justice Lens” was developed by Dr. Adriane Clark Jones as part of the Social Justice and Community Change Faculty Mentoring Network.

Description: This is a three-part student activity that could be done in lecture or lab. Part 1 assigns a series of current popular press articles to read and a series of discussion questions. Students read and complete this section before the in-class activity. Part 2 takes place in class, students will be introduced to ESRI ArcGIS online and guided through a mapping activity using Living Atlas Layers. The students answer questions about their map. Part 3 is assigned as homework students select two Real-Time EPA AirNow Air Quality Monitoring Sites and download a year of data for the two locations from https://www.epa.gov/outdoor-air-quality-data/download-daily-data. The students will use Microsoft Excel to plot the data from each location and then use the graphs to answer questions.

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Quantifying the Drivers and Impacts of Natural Disturbance Events - the 2013 Colorado Floods

The curriculum module “Quantifying the Drivers and Impacts of Natural Disturbance Events - the 2013 Colorado

Floods” was created by Dr. Leah Wasser and Dr. Megan A. Jones as part of the National Ecological Observatory Network.

Description: This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of figures, while optional coding extensions teach R skills.

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Sam S Donovan onto CREEDS Workshop Curriculum Modules

Implementing Demography from Cemetery Module

The curriculum module “Implementing Demography from Cemetery Module” was created by Dr. Alexis Racelis and is built on the TIEE publication:  Cemetery Module.

Abtract: This lab provides a rich and flexible version of widely-used demography exercises that have been previously based on data collected from cemeteries.  This lab teaches life tables and survivorship curves.  Over two lab periods, small student groups develop and answer questions comparing the survival patterns of different groups of humans (e.g., groups that differ in  time period, gender, ethnicity, etc.).  Data on human demography can be gathered from tombstones in local cemeteries that provide ages at death.  Students may also compare survivorship curves on the same groups generated by different data sets.

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Sustainability Metrics

The curriculum module “Sustainability Metrics” was created by Dr. Natalie Hunt and is published as part of Project Eddie. 

Summary: Sustainability is a complex term applied to many different contexts in a variety of ways. As a result, it can be challenging to determine how sustainable something really is. In this module, students will use an analytical framework with publicly available data to formulate questions, analyze data, and report metrics of sustainability.

Discuss this curriculum module here. You will need to be logged in to view the discussion.

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About this Collection

This is a collection of materials that we are asking you to review in advance of the CREEDS meeting. We have set up a discussion forum (you will need to be logged in to read and post) where we can share ideas and questions about these readings in advance of the meeting. 

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Episode 2 of “The Crowd and the Cloud” Series, “Citizens + Scientists”

This episode of the Crowd and the Cloud, hosted by former NASA Chief Scientist Waleed Abdalati, highlights four community-led data collection projects. These projects focus on issues of air and water pollution and on how citizens have taken data collection into their own hands to promote awareness and enact change. Though all of these stories are excellent and you are welcome to watch the full episode, we have selected just one project for the pre-workshop preparation (Philly Unleaded), which ends at 21:42.

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Excerpts from the Toolkit for Centering Racial Equity Throughout Data Integration by Actionable Intelligence for Social Policy

This toolkit examines how data sharing and integration by governments can be more equitable and transparent and engage communities. The PDF linked above provides an overview of best practices at each stage of the data science process, from planning through dissemination. About a 15 minute read.

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Table 2 in The development of a model of culturally responsive science and mathematics teaching

In this 2013 paper, Cecilia M. Hernandez, Amanda Morales, and Gail Shroyer outline a model for culturally responsive teaching in STEM. Though you are welcome to read through this paper in its entirety, the model is well-summarized in Table 2. You can refer to this table periodically as you consider various approaches implementing culturally responsive pedagogy. See page 20 of the pdf. About a 5 minute read.

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The Cult of Pedagogy Podcast, Episode 78: Four Misconceptions About Culturally Responsive Teaching

Jennifer Gonzalez, the host of “The Cult of Pedagogy Podcast”, interviews Zaretta Hammond in this episode. Zaretta Hammon is the author of the book “Culturally Responsive Teaching in the Brain”. Jenniver and Zaretta discuss what is and is not culturally responsive teaching, helping to clarify common misconceptions held by faculty that prevent them from effectively implementing this teaching approach. The podcast is available on all major podcast apps or the transcript can be read at the link above. About a 45-minute read or listen.

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Culturally Responsive Teaching: A Reflection Guide

This guide, written by Jenny Muñiz, is based on the framework for culturally responsive teaching that was developed by New America in 2019. The framework consists of eight core competencies for culturally responsive teaching. Jenny Muñiz provides brief descriptions of and reflection questions for each of these competencies. About a 25 minute read.

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HHMI SEA-PHAGES and GENES: Course-based UREs Designed for All

The HHMI Science Education Alliance (SEA) program supports a community of faculty members and institutions embed research as a fundamental component of early undergraduate science curricula.

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Introducing PHAGES Students to Primary Literature

The ‘Introducing PHAGES Students to Primary Literature’ set of teaching resources offers faculty 2 distinct sets of teaching resources for introducing students to scientific literature in the classroom.

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Hannah Gavin onto PHAGES

Assessing Socioeconomic Trends in Tree Cover and Human Health in Urban Environments

In this exercise, students use a combination of publicly available data and tree cover data that they generate using iTree Canopy to test whether tree cover is equitably distributed within the city of Dallas.

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A Phenology-focused CURE using Herbarium Specimen Data

from workshop June 2021

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Amanda Braley onto BIOL 205L

Blackpast - List of Black Individuals who Contributed to Different Aspects of STEM Knowledge and Innovation

This site provides a curated list of Black individuals and their stories who have contributed to different STEM innovations. This list can be used to support scientist spotlights. 

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Decolonising Science Reading List by Chanda Prescod-Weinstein

Here is a list of curated readings by Dr. Chanda Prescod-Weinstein that provide different perspectives on how we understand the co-constructing of science and society from a diverse communities. 

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Discrete Math Modeling with Biological Applications (Course Materials)

These are the materials for Math 214 offered at Rhodes College.

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Agent-Based Modeling Course Materials

ABM Erin Bodine

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Black Lives Matter: Revisiting Charles Henry Turner’s experiments on honey bee color vision

This article details the contributions of Charles Henry Turner to the examinations of animal behavior. This information can be used when teaching about contributions to science by Black scholars.  

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BioQUEST / QUBES Community Standards for Events

This is a resource that has more than one version and an adaptation.

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DEI Syllabus Statement (Panvini)

DEI statement for Syllabi - drafted in spring FMN

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Elevator Pitch: An Activity to Help Students Communicate Their Research

In this activity, students and the research mentor co-develop an elevator pitch that students can use to communicate their research.

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Julie Merkle onto SEA-PHAGES

Reflective Writing Tools: Building Skills and Habits of Thinking in Becoming a Scientist

Reflective writing tools are intended to help students better connect current learning experiences to prior learning, engage the role of emotion in current and future learning, and assess learning experiences to improve future learning.

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Julie Merkle onto SEA-PHAGES

HHMI SEA-PHAGES and GENES: Course-based UREs Designed for All

The HHMI Science Education Alliance (SEA) program supports a community of faculty members and institutions embed research as a fundamental component of early undergraduate science curricula.

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Julie Merkle onto SEA-PHAGES

Phage Discovery Videos

A compilation of videos to support teaching the concepts and protocols for discovering and working with phage.

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Julie Merkle onto SEA-PHAGES

Introducing PHAGES Students to Primary Literature

The ‘Introducing PHAGES Students to Primary Literature’ set of teaching resources offers faculty 2 distinct sets of teaching resources for introducing students to scientific literature in the classroom.

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Julie Merkle onto SEA-PHAGES

Giant tortoise found in Galápagos a species considered extinct a century ago

"Ecuador has confirmed that a giant tortoise found in 2019 in the Galápagos Islands is a species considered extinct a century ago.

The Galápagos national park is preparing an expedition to search for more of the giant tortoises in an attempt to save the species."

 source: Giant tortoise found in Galápagos a species considered extinct a century ago | Galápagos Islands | The Guardian

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Macromolecular math

This worksheet was developed for use in an introductory biology course to review the chemical bonds and structure of biological macromolecules. A nutritional label is provided to illustrate that we consume macromolecules in our foods.

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Exploring Health Inequities and Redlining

For this assignment, students will investigate relationships between historic redlining data and modern statistics of human health.

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Structure Matters: Twenty-One Teaching Strategies to Promote Student Engagement and Cultivate Classroom Equity

Below are 21 simple teaching strategies that biology instructors can use to promote student engagement and cultivate classroom equity. To provide a framework for how these teaching strate- gies might be most useful to instructors, I have organized them into five sections, representing overarching goals instructors may have for their classrooms, including:

  • Giving students opportunities to think and talk about biology

  • Encouraging, demanding, and actively managing the participation of all students

  • Buildinganinclusiveandfairclassroomcommunityforall students

  • Monitoring behavior to cultivate divergent biological thinking  

  • Teaching all of the students in your biology classroom

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A Summary of Inclusive Pedagogies for Science Education

In this paper, we offer a brief review of six pedagogical and theoretical approaches used in education and science education that we grouped as inclusive pedagogies. Though not an exhaustive list, these pedagogies are more commonly used in educational research and have commonalities yet are distinctive in some ways. They collectively contribute to making science teaching and learning more inclusive to a broader population of learners, such as students from diverse cultural, linguistic, and social backgrounds and students with physical and learning differences who have traditionally been marginalized in learning science. Furthermore, these inclusive pedagogies aim to decrease educational inequities and raise the level of academic rigor and access for all students. Finally, we discuss ways these inclusive pedagogies can be extended to address reform efforts in science education.

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Signaling Inclusivity in Undergraduate Biology Courses through Deliberate Framing of Genetics Topics Relevant to Gender Identity, Disability, and Race

The study of genetics centers on how encoded information in DNA underlies similarities and differences between individuals and how traits are inherited. Genetics topics covered in a wide variety of undergraduate biology classrooms can relate to various identities held by students such as gender identity, disability, and race/ethnicity, among others. An in- structor’s sensitive approaches and deliberate language choices regarding these topics has the potential to make the critical difference between welcoming or alienating students and can set a tone that communicates to all students the importance of diversity. Separating the sperm/egg binary from gendered terms in coverage of inheritance patterns, along with inclusion of transgender people in pedigree charts, may make the classroom more wel- coming for students of diverse gender identities. Choosing nonstigmatizing language and acknowledging disability identities in discussions of genetic conditions may help students with visible and invisible disabilities feel validated. Counteracting genetics-based pseudo- scientific racism and the stereotype threat to which it contributes may be facilitated by more thorough integration of quantitative and population genetics topics. Instructors may thus potentially enhance retention of students of diverse backgrounds in biology through careful consideration and crafting of how human differences are described and connected with principles of genetics.

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Understanding what STEM mentoring ecosystems need to thrive: A STEM-ME framework

Abstract: 

Racial and gender disparities persist in science, technology, engineering, and mathematics (STEM) despite decades of mentoring interventions to improve recruitment and retention. We offer a STEM Mentoring Ecosystems (STEM-ME) framework to better situate, understand, and advance the mentoring systems that are needed to bring about change. We outline a STEM-ME framework, which we argue require shifts in perspective, expanding beyond individual mentees and mentors, as well as specialized mentoring programs, to analyze the mentoring ecosystems within which STEM mentoring operates. Next, we use this framework to examine and critique current mentoring infrastructure and mentor preparation; this includes an inventory of assets and gaps as pertaining to faculty, students, and administrators as mentors. Then, we examine how silos could be more synergistic, which new structures are needed, who and where the ecological stewards are, and implications for systems change. How the STEM-ME framework informs future empirical research and practice is discussed.

 

Reflection: This resource poses specific questions regarding what we should consider as we look to re-envisioning mentoring for Black STEM students at the national, institutional, and local mentoring networks 

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Teacher Leadership - Focusing on Personal and Collective Action Through Book Clubs

This is a curated list of reading materials by Dr. Felicia Mensah that can help foster interpersonal growth and development as a teacher looking to engage in advocacy and activism for racially minoritzed students. 

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SYLLABUS REVIEW GUIDE FOR EQUITY-MINDED PRACTICE

The Syllabus Review Guide is comprised of six parts that provide the conceptual knowledge and practical know-how to conduct equity-minded self-reflection on an essential document in academic life: the syllabus. Throughout the Guide are examples that illustrate the ideas motivating syllabus review, as well opportunities to practice inquiry and to reflect on how to change your syllabi—and your teaching more generally—so are more equity-minded.

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2021 EDSIN February Community Call

Drs. Nate Emery, Drew Hasley, and Ellen Bledsoe presented and led a conversation on their recent publication: Cultivating inclusive instructional and research environments in ecology and evolutionary science. Specifically, they focused on the following:

  • The motivation for and development of the publication
  • Overarching themes of: Empathy, Flexibility, and Growth Mindset
  • Inclusive teaching practices (e.g. group learning, names/pronouns, syllabi and norms, and increased representation)
  • Inclusive lab culture (e.g. recruitment practices, interpersonal interactions, and cultural norms)
  • Inclusive fieldwork (e.g. advance prep, code of conduct, cost barriers, and accessibility)

Recorded on February 4, 2021. 

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2021 EDSIN April Community Call

The Academic Data Science Alliance, an EDSIN network contributor, joined us to present on the work of ADSA's Ethics Working Group. They have been re-imagining the Data Science Lifecycle to incorporate ethical considerations into each stage of the data science workflow. Presentation was recorded on April 1, 2021. 

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Understanding COVID-19 Biology to Design a Vaccine

This multi-part case study introduces the reader to the SARS-CoV-2 virus, replication, and treatment. Additional worksheets introduce students to bioinformatics tools of 3-D protein visualization and BLAST searches.

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Keith A. Johnson onto Genetics

Some questions to ask the featured scientists

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Pratima Jindal onto Resources

Dei statments examples for syllabi and tenure and promotion links

Contains a few examples from web search

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Pat Marsteller onto DEI statements resource

Professor Asmeret Berhe

Professor Asmeret Berhe at the University of California, Merced, 

Professor Berhe works at the intersection of soil, climate change, and political ecology.  

 

Dr. Berhe is an advocate for women in science and renowned in addressing racism in the field of earth science, geoscience, and soil science, etc. Here are a few examples of her advocacy and global impact work: Race and Racism in Soil Science, Women in Soil Science, and Ten Simple Rules to build an antiracist lab. Dr. Berhe received multiple prestigious awards and honors including Joanne Simpson Medal from the American Geophysical Union., 2020; Great Immigrants Award, Carnegie Corporation of New York, 2020; Randolph W. “Bill” and Cecile T. Bromery Award, Geological Society of America, 2019; and New Voices in Science, Engineering, and Medicine, National Academy of Sciences, 2018. Her TED Talk (A climate change solution that is right under our feet) has been viewed over 1.9 million times

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Examples of LO before and after

This is a file from a site previously mentioned but clearly illusstrates examples

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Bloom's and LO

Great short article on tips for writing LO and examples

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Towards a clearer understanding of student disadvantage in higher education: problematising deficit thinking

Abstract: The increased diversity in the student body resulting from massification poses particular challenges to higher education. This article engages the uncritical use of the ‘disadvantage’ discourse and its effect on pedagogy. It explores some of the challenges of coping with student diversity, with particular reference to the South African context. Students enter higher education institutions with a variety of educational backgrounds, not all of which are considered to be sufficient preparation for the demands of higher education. The dominant thinking in higher education attempts to understand student difficulty by framing students and their families of origin as lacking some of the academic and cultural resources necessary to succeed in what is presumed to be a fair and open society. This constitutes a deficit thinking model: it focuses on inadequacies of students and aims to ‘fix’ this problem. In the process the impact of structural issues is often ignored or minimised. Employing a deficit mindset to frame student difficulties perpetuates stereotypes, alienates students from higher education and disregards the role of higher education in perpetuating the barriers to student success. In the process, universities replicate the educational stratification of societies. This article suggests that we need to find more suitable responses to diversity in the student body. These require a change in our way of thinking: we need thoughtfully to consider the readiness of higher education institutions to respond to students and to cultivate the will to learn in students. We need to find ways to research the full texture of the student experience and to value the pre-higher education contexts from which students come. In addition, the notion of ‘at risk’ students

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From Deficiency to Strength: Shifting the Mindset about Education Inequality

Abstract:

The “achievement gap” as a symptom of persistent social inequity has plagued American education and society for decades. The vast chasm in academic achievement has long existed along racial and poverty lines. Children of color and from low-income families have, on average, performed worse on virtually all indicators of academic success: standardized test scores, high school graduation rates, and college matriculation rates. This gap perpetuates the existing inequalities in society. Efforts to close the achievement gap have had little effect. The gap remains and has actually widened. This article argues the gap is symptomatic of the deficit-driven education paradigm. Fixing the traditional paradigm is unlikely to close the gap because the paradigm reinforce and reproduces educational and social inequity by design. To work toward more educational and social equity, we need to adopt a different paradigm of education. The new paradigm should work on cultivating strengths of individual students instead of fixing their deficits.

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Mentoring Through the Transitions: Voices on the Verge

Descriptions of how to support students through critical transitions in which culture changes (e.g., high school to college, community college to four-year institution). Collection of case studies and perspectives:

https://files.eric.ed.gov/fulltext/ED592380.pdf

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Resources for Scientist Spotlights - ecology, evolution, conservation, organismal biology

A Google Doc I've been assembling with links to research and media for some potential scientist spotlight candidates

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Sample iNaturalist assignment for intro bio

This is my assignment using iNaturalist in an intro bio lab class to characterize biodiversity on Campus. Please feel free to adapt and use as you like :) 

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Adriane Clark Jones onto Authentic assignments

Bioskills table

I think it's probably posted elsewhere, but here's the bioskills table

 

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Pat Marsteller onto Actusl Bioskills table

New York times learning network

This site has relevent materials for teachers and students on many topics.

An example is this link on talking about race...an on demand webinar

https://www.nytimes.com/2021/02/11/learning/on-demand-webinar-talking-about-race-and-racism-in-the-classroom-using-the-new-york-times.html

 

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America needs all of us

Guide to having discussions about race

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Racial Justice in Education Guidebook

Although aimed at K12...very useful guide

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guides for discussion

Contains a set of links to guidelines and topics about talking about race

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Social media resources

Please add Twitter handles and hashtags to follow to this group Google doc

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Google doc for Link sharing

Please add your links you would like to share - we would like to have a single document of links we have shared for use now and in the future.

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Sarah Prescott onto Resources

some of our bio candidates may be of interest

See attached PPT

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Resource list for inclusive teaching in STEM (HHMI)

Resource related to DEI and inclusive teaching.

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Moustapha Diack onto Inclusive Teaching

The Human Microbiome Biodiversity in Health and Disease

The students will analyze the human gut and vaginal microbiomes in healthy and diseased states using diversity of bacteria as determined by 16SrRNA sequence.

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Investigating human impacts on stream ecology: locally and nationally

TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally? This is an adaptation of the module that includes statistical testing and links sections to a lab report writing.

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This resource contains many resources for quantitative reasoning

Internet Resources for Data Analysis

 

 

There are a variety of excellent resources on the Internet for active learning with data analysis. A sampling of them is included below. Some of these websites include raw data (or previously compiled data); others include user-friendly data analysis tools for extracting data, analyzing data, and/or producing maps, charts, and tables; and still others have combinations of many of these features.

For a list of the statistical sites on the World Wide Web including (1) principal US federal statistical agencies, (2) state labor market information agencies, and (3) national statistical agencies of other countries and international organizations, please see the listing provided by the United States Bureau of Labor Statistics. Several of those agencies are indicated below.

Video of Hans Rosling

"Rosling's famous lectures combine enormous quantities of public data with a sport's commentator's style to reveal the story of the world's past, present, and future development. Now he explores stats in a way he has never done before - using augmented reality animation. In this spectacular section of 'The Joy of Stats' he tells the story of the world in 200 countries over 200 years using 120,000 numbers - in just four minutes. Plotting life expectancy against income for every country since 1810, Hans shows how the world we live in is radically different from the world most of us imagine." Rosling is also co-founder and chairman of GapMinder.

 

Hans Rosling's 200 countries, 200 years, 4 minutes.

 

Assorted Resources

Amber Waves

Online version of a magazine published 5 times a year by the US Department of Agriculture, Economic Research Service. Click on data to get data on a variety of topics ranging from animal products to food safety.

Association of Religion Data Archive

Click on QuickStats to get information on dozens of topics and see responses from major national surveys, demographic patterns, and changes over time (e.g., attitudes about moral issues, religious beliefs about God, etc.).

Australian Bureau of Statistics (ABS)

ABS has data on a variety of topics such as population, key economic indicators, census data, CPI, labor force, etc.

[link http://www.bom.gov.au/?ref=hdr 'Australian Government Bureau of Meteorology']

Web site has information on a variety of weather measures including daily rainfall, climate change, extremes of climate, etc.

Census Explorer

The U.S. Census's interactive map series for analyzing census data.

Census Reporter

Census Reporter "provides useful facts about every place in America. Compare places using tables and maps, download data, and embed charts on your site."

Center for Socio-Political Data (CDSP)

The CDSP "is responsible for archiving and distributing socio-political data." Check out their visualization lab.

Centers for Disease Control and Prevention

Data on a variety of health conditions ranging from birth defects to HIV/AIDS to injuries & violence, and many others. Check outWISQARSTM(Web-based Injury Statistics Query and Reporting System) for "an interactive database system that provides customized reports of injury-related data."

China National Bureau of Statistics

Check out theChina Statistical Database for information on a variety of topics such as population, birth and death rates, CPI, etc.

Council of European Social Science Data Archives

CESSDA is an umbrella organization for social science data archives across Europe. Many data sets are directly downloadable.

Create a Graph

Create a variety of graphs or charts using your own data.

Czech Statistics

Czech Statistics has information on population, elections, labor and social statistics, foreign trade, etc.

Data and Information Services Center (DISC) at the University of Wisconsin Libraries

DISC "provides quantitative, numeric microdata for researchers and students conducting secondary analysis in the social sciences. For DISC users not familiar with statistical software, we have an array of data products with menu-based interfaces."

Data and Story Library

DASL (pronounced "dazzle") is an online library of datafiles and stories that illustrate the use of basic statistics methods.

DataMarket

Data market allows users to explore datasets, upload data, build reports, and create visualizations.

Dave Manuel

"Dave Manuel" is an "an online repository of financial and political information that is often searched for but is generally hard to find."

Data Planet

Data Planet is the "largest repository of standardized and structured statistical data." It is a SAGE publishing resource.

Death Penalty Information Execution Database

Information on death penalty cases by gender, race/ethnicity, execution technique, etc.

Debt Statistics

There are a variety of internet resources available to get information on different countries' debts, such as theUnited States or numerous other countries in theworld.

Diversity Data Kids

This resource allows you to "explore hundreds of measures of child wellbeing and policy analysis from a unique information source that documents diversity, opportunity, and equity among children."

Esri: Understanding our World

Enter zip codes to get information about areas such as income, types of people living in areas, etc.

Eurostat

A variety of European statistics on topics ranging from population to unemployment to GDP.

Europe's Energy Portal

Data on information related to energy in Europe, including fuel prices.

FedStats

A web site that makes statistics from more than 100 agencies available to citizens everywhere.

Federal Bureau of Investigation

Data on a variety of different kinds of information related to crime.

Federal Deposit Insurance Corporation

Choose a state and county (or MSA) and get information on regional economic conditions.

Flowing Data

A resource of visualizing data from beginner to advanced development by Nathan Yau.

GapMinder

Information on hundreds of indicators for countries throughout the world including cell phone use, cancer, CO2 emissions, etc.

Germany Destatis

This website provides statistics from Germany on a variety of topics such as demographic indicators, unemployment, etc.

Global Health Observatory of the World Health Organization (WHO)

The Global Health Observatory is WHO's "gateway to health-related statistics for more than 1000 indicators for its 194 member states."

Google Public Data

This is an excellent and extensive data collection from a variety of sources and on a variety of topics. Data from many of the websites featured on this page are included in Google Public Data, which allows for visual representation of such data.

The Guardian's Website for Data Journalism and Data Visualization

The Guardian's website for data journalism and data visualization features articles and primary data. TheGuardian's Datablog features hundreds of data sets, many UK-based.

Harvard Forest Data Archive

The data archive contains datasets from scientific research at the Harvard Forest.

Henry J. Kaiser Family Foundation Global Health Facts

Health information available on a country basis (e.g., HIV/AIDS, TB, Malaria, health workforce and capacity, demography and population, etc.).

India Ministry of Statistics and Programme Implementation

Check out the link for information on population, education, health, labor and employment, etc.

Internal Revenue Tax Statistics

At the IRS Tax Statistics website "you will find a wide range of tables, articles, and data that describe and measure elements of the U.S. tax system."

International Energy Agency

"The IEA works to ensure reliable, affordable and clean energy for its 30 member countries and beyond. Our mission is guided by four main areas of focus: energy security, economic development, environmental awareness and engagement worldwide."

Inter-University Consortium for Political and Social Research

ICPSR "offers more than 500,000 digital files containing social science research data. Disciplines represented include political science, sociology, demography, economics, history, gerontology, criminal justice, public health, foreign policy, terrorism, health and medical care, early education, education, racial and ethnic minorities, psychology, law, substance abuse and mental health, and more."

International Telecommunication Union

ITU has data on a variety of topics ranging from cell phone usage to broadband and many more.

Ireland Central Statistics Office

The Ireland Central Statistics Office has data on a variety of topics population; births, deaths and marriages; health and social conditions; education; crime and justice, etc.

Israel Central Bureau of Statistics

The Israel Central Bureau of Statistics provides data on population, households and families, labor and wages, and much more.

Italian National Institute of Statistics (ISTAT)

ISTAT has a number ofdatasets on a variety of topics ranging from protests to income and living conditions to hospitalizations of psychiatric patients.

Kenya Open Data Initiative

The Kenya Open Data Initiative makes key government data (e.g., Kenya Census) available to the public through a single portal. "The 2009 regional census, national and regional expenditures, and information on key public services are some of the first datasets to be released."

Kids Count

"A project of the Annie E. Casey Foundation, KIDS COUNT is the premier source for data on child and family well-being in the United States. Access hundreds of indicators, download data and create reports and graphics on the KIDS COUNT Data Center that support smart decisions about children and families."

Mexico National Institute of Statistics and Geography (INEGI)

INEGI provides data on a variety of topics in Mexico including population, occupation and employment, GDP, etc.

Money Geek

Financial tools, calculators, and resources on a variety of topics (e.g., credit cards, mortgages, protecting assets, educational spending).

Mortality Data Analysis

A collection of data sets on mortality.

Mortgage Calculator

This site includes mortgage calculators as well as a variety of different interesting calculators (e.g., what day were you born, etc.).

My Money

My Money "is the U.S. government's website dedicated to teaching all Americans the basics about financial education." As described, the "site organizes financial education help from over 20 different Federal web sites in one place. Content is organized by where you are in life ('Life Events'), who you are ('My Resources'), and by specific hands-on tools ('Tools'). Popular Topics are also highlighted."

National Aeronautics and Space Administration (NASA) data sets

A rich repository of earth science resources and data sets (e.g., agriculture, atmosphere, biosphere, cryosphere, etc.).

National Archives Experiences: Docs Teach

A guide for teaching history using engaging exercises. Click oncreate your own fun and engaging activities to create your own interactive learning activity.

National Center for Catastrophic Sport Injury Research

The National Center for Catastrophic Sport Injury Research "collects and disseminates death and permanent disability sports injury data that involve brain and/or spinal cord injuries."

National Center for Education Statistics

Click onData and Tools to create customized tables, download NCES survey datasets, or get quick statistics, etc.

National Oceanic and Atmospheric Administration (NOAA)

The National Climatic Data Center seeks to "monitor and assess the state of the Earth's climate in near real-time, providing decision-makings at all levels of the public and private sectors with data and information on climate trends and variability including perspectives on how the climate of today compares with the past."

National Council of Teachers of Mathematics (NCTM)

NCTM hosts a collection of data sets organized by type, e.g., univariate, bivariate, multivariate, etc.

National Opinion Research Center (NORC)

Click onData Enclave to learn about the rich variety of data sets available from NORC for analysis.

New York City Department of Health and Mental Hygiene

Click ondata and statistics to get information on a variety of topics ranging from birth and deaths rates to communicable diseases and smoking.

New Zealand Statistics

Statistics New Zealand has data on a variety of topics such as population (births, deaths, etc.), businesses, economic indicators (e.g., GDP), education and training, government finance, health (abortion, disabilities, etc.), income and work, and industry sector.

OANDA

Click on thecurrency converter to get information on exchange rates for the US dollar as well as trends over time.

Organisation for Economic Co-operation and DevelopmentorOECD Stat

The OECD has a vast array of international data on a wide variety of topics ranging from income inequality to job vacancies to physicians per 1,000 population and much more.

Pew Research Center for the People and the Press

A data archive where users can download many of Pew's survey datasets. This page is organized by survey, where each dataset is identified by the name of the survey, and each data set is linked to reports released from that data.

Pew Internet and American Life Project

SelectDatasets to obtain frequently updated information on a wide range of indicators (e.g., demographic data, online activity data, gadget ownership, and internet adoption trends, etc.).

Population Reference Bureau

DataFinder, PRB's hub for national and international data, enables users to select a location to create customized tables and users may select a variety of topics (e.g., demographics, economics, education, environment, health, HIV, reproductive health, family structure, housing, income and poverty, labor force and commuting, scientists and engineers) to compare locations in terms of rankings, maps, trends, etc.

Quandl

Quandl "is a repository of times series data on the internet, tailored for researchers, students, and other data professionals. Quandl currently has over 4 million time-series datasets. Most of the data is in the domains of finance, economics, demography, sociology, energy and the environment. 1000s of new datasets are added to Quandl daily."

Quarterly Census of Employment and Wages

A quarterly count of employment and wages reported by employers covering 98 percent of U.S. jobs, available at the county, MSA, state and national levels by industry.

RAND

Reports and data on a variety of topics including children and families, education and the arts, energy and environment, health and health care, infrastructure and transportation, international affairs, law and business, national security, population and aging, public safety, science and technology, and terrorism and homeland security. After selecting a topic, users may click on resources such as "multimedia" to watch videos, listen to audio, and sometimes engage in interactive maps, etc.

SAGE Stats

"SAGE Stats make research easy by providing, in one place, annual measures dating back to more than two decades. It features statistical data series created from more than 400,000 government and non-government datasets covering popular topics of research interest for U.S. stages, counties, cities, metropolitan ares, and ZIP codes."

The Simple Dollar

The Simple Dollar is a website designed to promote financial literacy, especially for individuals who are fighting debt and have bad spending habits.

Singapore Department of Statistics

The Department of Statistics Singapore has data on a variety of topics including population, the GDP, external trade, manufacturing, employment, price index, etc.

Social Explorer

Interactive maps on a variety of topics (demographics, religion, etc.).

Social Security Administration

SSA has a collection of program statistics and data files by subjects (e.g., disability, economic status, health status, retirement, socioeconomic characteristics, etc.). See also the SSA's data onpopular baby names.

Social Science Data Analysis Network (SSDAN)

SSDAN provides a wealth of print publications as well as online tools and resources to help you explore demographic trends and further quantitative literacy. Check outCensusScope to obtain graphics and exportable trend data andTeaching with Data for a variety of resources (e.g., tables, charts, etc.).

Spain National Institute of Statistics

Check out thestatistical operations for data on a wide range of topics including demography and population, society (e.g., education and culture), etc.

Statista

Statista "consists of an extensive network of information resources and databases, providing an ideal platform to research and analyze facts and quantitative data."

Statistical Calculators

There areone-variable as well astwo-variable statistical calculators. For each, there are existing data sets (e.g., IQ scores of 7th graders, New York Yankees' salaries, tuition at Massachusetts colleges, wine and heart disease, male and female literacy rates, etc.) and/or users can enter their own data.

Statistics Course Data Sets (UCLA)

A "collection of growing data sets that are exclusively from UCLA researchers and exist for a variety of classrooms uses."

Statistics South Africa

This website includes statistical publications, key indicators, population statistics, interactive data and more regarding South Africa. It also allows users to explore statistics by place or by theme (e.g., cause of death, poverty, inflation, etc.).

Stat Labs

A variety of simpledata sets from the bookStat Labs: Mathematical Statistics Through Applications.

StatLib

StatLib is "a system for distributing statistical software, datasets, and information by electronic mail, FTP and WWW."

STATSAmerica

This website provides statistical profiles of each of the states, including information on the economy, education, income & taxes, population & housing, and workshop.

Survey Documentation and Analysis (SDA)

A set of programs for the documentation and web-based analysis of survey data including data sets such as the General Social Survey (GSS).

Teaching with Data

Teaching with Data "is a portal where faculty can find resources and ideas to reduce the challenges of bringing real data into post-secondary classes."

teAch-nology

Resources for teachers with various lesson plans and resources including graphing.

TuVa Labs

A website designed to (a) enable critical thinking and reasoning with data, (b) transition to the common core standards, and (c) bring local and global issues into the classroom. The website includes a variety of resources and datasets.

Understanding Uncertainty 

Understanding Uncertainty is a website "produced by Winton programme for the public understanding of risk based in the Statistical Laboratory in the University of Cambridge. The aim is to help improve the way that uncertainty and risk are discussed in society, and show how probability and statistics can be both useful and entertaining!" Look at, for example, the collection ofanimations.

UCLA Statistics Data Sets

This web site provides data sets for teaching, data from books, data from consulting project, data from consulting projects, data from national statistical agencies, social science data archives, and from US governmental agencies.

United Kingdom Office for National Statistics 

Check out thedatasets and tables for information on a variety of topics ranging from age by areas to public and private sector employment to expenditures on mortgages and much in between.

United Nations Economic Commission for Europe

The United Nations Economic Commission for Europe has data on a variety of topics including gender, economy, sustainable development, etc.

Bureau of Justice Statistics

BJS includes publications as well as online data tools for primary data analysis.

US Bureau of Labor Statistics

Information on a variety of labor-related statistics such as hourly wages, work-related injuries, etc.

United States Census Bureau

Data from the United States Census on a variety of topics (e.g., population by race/ethnicity, age, etc.). Check outAmerican FactFinder for easy access to information on a wide variety of topics. For international data, look at theInternational Programs web site or theInternational Data Base for data on many different countries, including population pyramids, etc. In addition, DataFerrett is a "unique data analysis and extraction tool-with recoding capabilities-to customize federal, state, and local data to suit your requirements."

United States Department of Agriculture Economic Research Service

the USDA Economic Research Service provides data on a variety of topics such as animal products, crops, farm economy, food markets and prices, etc.

United States Department of Agriculture National Agricultural Statistics Center

Users canquery NASS to get quick tables on a variety of topics (e.g., animals and products, crops, demographics, economic, environmental information, etc.).

United States Department of Commerce Bureau of Economic Analysis

A division of the US Department of Commerce. The web site has national (e.g., GDP, etc.), international (e.g., balance of payments), regional (GDP by state), industry, and integrated accounts. Also has interactive data.

United States Department of Transportation

The US Department of Transportation has data on topics such as US aircraft carrier inventory, border crossings/entry data, freight import and exports, and much more!

US Energy Information Administration

US EIA provides statistics "on crude oil, gasoline, diesel, propane, jet fuel, ethanol, and other liquid fuels. Click on the blue bars below for information on petroleum prices, crude reserves and production, refining and processing, imports/exports, stocks, and consumption/sales."

US Environmental Protection Agency

The United States EPA data finder has links to data on a variety of topics ranging from air to water quality and much more.

US Inflation Calculator

Use the US inflation calculator to measure the buying power of the dollar over time. Click oninflation and prices to look at indicators over time, etc.

Vanderbilt University Department of Biostatistics

Provides a collection of data sets on a variety of different topics (e.g., meningitis, cardiac catheterization diagnostic data, hypertension data from the Dominican Republic, German breast cancer, and numerous others).

Vietnam General Statistics Office

The Vietnam General Statistics Office has statistics on a variety of topics including administrative unit, land and climate; population and labor, national accounts, state budget, industry, education, health and many more.

Villanova Nursing Research Dataset Archive

Includes a variety of data sets (e.g., readability and patients with cancer, patients with glaucoma who keep or miss their appointments, etc.). Includes suggestions for analysis.

World Bank Data

The World Bank Data provides "free and open access to global development data."

World Health Organization

The World Health Organization's "Global Health Observatory" portal provides access to data and analyses for monitoring the global health situation. See also theWHO/UNICEF Joint Monitoring Programme for Water Supply and Sanitation.

World Resource Institute (WRI)

WRI has data sets on a variety of topics related to world resources, such as green house gas emissions and other climate-relevant indicators.

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Bioskills Guide

This guide provides the validated learning outcomes tied to Vision and Change

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iTree Canopy for Estimating Cover Types from Satellite Images

This a a U.S. Forestry Service tool that can be used to estimate impervious versus vegetated cover in Census Tracts or user defined areas. This tool can also be used to estimate Ecosystem Services provided by the vegetated areas in the defined area or interest. It could be a good tool for comparing these services (air pollution removal for example) between or among areas.

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U.S. Census Academy

This website has various resources (webinars, how to instructions) for learning to access, utilizing and visualize the data available from the U.S. Census Bureau.

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podcasts and vodcasts

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Educator guides: designing the future

Some great examples of authentic products aimed at environmental engineering

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Sample assignments types

Lots of examples EIS statements, websites public service announcements and more

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Internet Resources for Data Analysis

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Yeti or not: Do they exist?

Through this 4-part bioinformatics case study, students will be led through the forensic analysis of putative Yeti artifacts based on published findings.

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Confluence- From Bryan Dewsbury

"Confluence is a seminar video series with the explicit aim of introducing undergraduates to the lives and work of researchers in the field of biology.

We aim not only to introduce students to the latest scientific questions being addressed in the field, but more importantly to talk about when in their lives these men and women decide to pursue questions of how this world works."

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ISKME's open educational practices rubric

"This rubric defines a set of open educational practices that help educators to advance a culture of open education, and to advocate for the potential benefits of open educational resources (OER) in the context of continuous improvement." 2017 by Megan Simons. 

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Universal Design for Learning Theory and Practice

CAST's book on UDL - a deeper look at its history and applications. Online access to the book is free with an account. 

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UDL progression rubric - where are you at now?

Rubric to help you see where you lie along the continuum of UDL best practices. Novak & Rodriguez 2018.

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UDL guidelines from CAST - the canonical source

A graphical organization of Universal Design for Learning guidelines, which you can burrow into to explore each component. 

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UDL Observation Measurement Tool

This article describes an instrument used to measure UDL implementation (instructor fidelity). UDL (and I'd say other frameworks we've looked at) are incredibly difficult to operationalize. Or decide what "counts." It doesn't really touch student success, but operates on the understanding that UDL is based on research that improves student success. 
 

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STEM OER Accessibility Framework and Guidebook

This framework, developed by ISKME in partnership with SERC, provides a practical reference for curators and authors of STEM OER, with 23 accessibility criteria, or elements, to reference as they curate, design and adapt materials to be accessible.

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DO-IT Center Resources

Several links to guides and lists of resources for accessible teaching from the DO-IT Center out of the University of Washington.

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Accessibility Toolkit

The goal of the Accessibility Toolkit – 2nd Edition is to provide resources for each content creator, instructional designer, educational technologist, librarian, administrator, and teaching assistant to create a truly open textbook—one that is free and accessible for all students.

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WAVE Web Accessibility Evaluation Tool

WAVE is an accessibility evaluation tool from WebAIM. Just enter a url into the tool and WAVE will provide you with a report of adherence with Web Content Accessibility Guidelines (WCAG) and suggest changes for improvement. 

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Designing Accessible OERs with POUR

Links to a Google slide presentation by CAST representatives on designing accessible Open Educational Resources. 

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The growing importance of data literacy in life science education

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How UDL Can Support Your Transition to Online Teaching

Crowd-sourced table of online teaching practices that align to the UDL guidelines specific to the affective network

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Jo Boaler's TEDx Stanford Talk

Jo Boaler discusses mathematical mindsets. Also linked is her website, youcubed with further information and resources

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The Why of UDL

A video that provides an overview of Universal Design for Learning and why it is important. 

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Accessible Teaching in the Time of COVID-19

Blog post with some practical tips focusing on accessibility but that are also connected to UDL

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Education resources on Data Nugget website

On our Data Nugget website we have a Resources page where we collect all of the great education resources that have come to our attention over the years. We'll be sure to update it with all the suggestions you share here! 

The resources are organized by the science or math concepts addressed, and we have a list of other great educational program websites.

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HHMI BioInteractive teacher guide for math and stats

Topics include measures of average (mean, median, and mode), variability (range and standard deviation), uncertainty (standard error and 95% confidence interval), Chi-square analysis, student t-test, Hardy-Weinberg equation, frequency calculations, and more. 

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MathBench

These modules introduce students (and anyone else who's interested) to the mathematical underpinnings of what they learn in introductory biology courses. But unlike a textbook, the modules are not full of equations and proofs. Instead, we try to bring math to life using intuitive approaches, everyday situations, and even humor. The modules contain hundreds of interactive activities, games, and questions. They range from the relatively simple (what to do with division) to the relatively abstruse (discrete diffusion models).

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Settler colonialism and pandemics

Native Americans misrepresented in health data pay a heavy COVID-19 price

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The Science of Mentorship Podcast

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The Science of Mentorship Podcast

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How LGBT+ scientists would like to be included and welcomed in STEM workplaces

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How LGBT+ scientists would like to be included and welcomed in STEM workplaces

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STEM OER Accessibility Framework and Guidebook

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STEM OER Accessibility Framework and Guidebook

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Project BioDiversify

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Decolonizing Science: What is "Parachute Science?"

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Decolonizing Science: What is "Parachute Science?"

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Women Scientists Have the Evidence About Sexism

Centuries of bias have impeded the advance of human knowledge.

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How Can STEM Disciplines and STEM Education Work in Concert to Address Systemic Racism and the COVID-19 Pandemic? Creating a New Normal for STEM Education

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How Can STEM Disciplines and STEM Education Work in Concert to Address Systemic Racism and the COVID-19 Pandemic? Creating a New Normal for STEM Education

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Data Management in Excel and R using National Ecological Observatory Network's (NEON) Small Mammal Data

Students use small mammal data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by re-organising excel sheets in an R-compatible format and doing basic analysis in R

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Estimating Tree Heights: Right Triangle Trigonometry

This module introduces basic trigonometry calculations in the context of understanding tree height calculations. It is intended for an introductory biology audience.

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NIQB Curriculum Map

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Gapminder

Gapminder identifies systematic misconceptions about important global trends and proportions and uses reliable data to develop easy to understand teaching materials to rid people of their misconceptions.

Gapminder is an independent Swedish foundation with no political, religious, or economic affiliations.

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Information is Beautiful

Founded by David McCandless, author of two bestselling infographics books, Information is Beautiful is dedicated to helping you make clearer, more informed decisions about the world. All our visualizations are based on facts and data: constantly updated, revised and revisioned.

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Scientist Spotlight Initiative

The Scientist Spotlights Initiative empowers middle/high school, college, and university science educators to implement inclusive curricula that help ALL students see themselves in science. We provide access to easy-to- implement assignments/activities that link course content to the stories of counter-stereotypical scientists. 

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Information is Beautiful

Explore interactive graphs of various issues, including COVID 19.

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Gapminder Videos

Videos and tools to engage students with socially relevant statistics.

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PhET

PhET provides fun, free, interactive, research-based science and mathematics simulations. We extensively test and evaluate each simulation to ensure educational effectiveness. These tests include student interviews and observation of simulation use in classrooms. The simulations are written in Java, Flash or HTML5, and can be run online or downloaded to your computer. All simulations are open source (see our source code). Multiple sponsors support the PhET project, enabling these resources to be free to all students and teachers.

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Molecular Case Net

Mission: To assemble a new network (Molecular CaseNet); for developing molecular case studies at the interface of biology and chemistry, discussed in atomic detail; and engaging educators in using them for undergraduate level biology, chemistry, and biochemistry instruction.

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Enduring Legacies: Native Cases

Our goal is to develop and widely disseminate culturally relevant curriculum and teaching resources in the form of case studies on key issues in Indian Country. 

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National Center for Science Case Study Teaching in Science

This site has limited access without a membership.

Cases can be used not only to teach scientific concepts and content, but also process skills and critical thinking. And since many of the best cases are based on contemporary, and often contentious, science problems that students encounter in the news, the use of cases in the classroom makes science relevant...

 

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Investigative Case Based Learning

Investigative Case-Based Learning (ICBL) is a variant of Problem Based Learning that encourages students to develop questions that can be explored further by reasonable investigative approaches. Students then gather data and information for testing their hypotheses. They produce materials which can be used to persuade others of their findings. Students employ a variety of methods and resources, including traditional laboratory and field techniques, software simulations and models, data sets, internet-based tools and information retrieval methods.

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QB@CC

An NSF funded network of community college biology and math faculty developing  OER quantitative biology modules. Check the website for modules, and join the group for updates about upcoming opportunities.

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Biome Social Justice files

https://drive.google.com/drive/folders/1RLMTU-aJh7MVi7ujt86PHG_WKcN9NJBy?usp=sharing

on google drive

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Water Quality link

https://drive.google.com/drive/folders/1DNewL4MBUDGnvG7x_Z4g6AmrCEOmM0ZN

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Air Quality and SJ reading

https://drive.google.com/drive/folders/13K0im_qxJyTn7QGKhBY2_6Lzi1gt8LR4

Link to folder

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Data nuggets and What is Sencer

https://drive.google.com/drive/folders/1N8GTTVpk39TGkv44i2HS5Qfvh9fmqqzR

Link to folder

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Biostatistics using R: A Laboratory Manual

Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language to biology majors.

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Biostatistics using R: A Laboratory Manual

Biostatistics Using R: A Laboratory Manual was created with the goals of providing biological content to lab sessions by using authentic research data and introducing R programming language to biology majors.

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REMNet Newsletter November 2020

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REMNet Newsletter October 2020

The October edition of our newsletter! :)

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REMNet Newsletter September 2020

The September edition of our newsletter! If you have any news you would like to share with the community let us know at ugmicronet@gmail.com! :)

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Re-Envisioning Culture Network A Syllabus Guide

The Re-Envisioning Culture Network Syllabus aims to honor Black identity and culture while acknowledging the barriers that Black undergraduate students face through definitions, art, storytelling, and poetry. We invite those who read this syllabus to learn more about the terms, research, and experiences around Black racial identity, an intersectional gendered- raced identity and Black culture within the United States. This is not an exhaustive list but hopefully a start to your journey towards consciousness.

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Expanding the Science Capital in K–12 Science Textbooks: A Notable Doctor’s Insights into Biology & Other Accomplishments of African American Scientists (C. Quinlan, 2020)

This article explores the need to include the science capital and cultural capital of African Americans in science teaching and offers practical exemplars for inclusion in the K–12 science curriculum. The author discusses ideas in the evolution of culture that contribute to the science content and perspectives of current textbooks and their supporting educative curriculum materials. The exemplars provided shed light on the scientific concepts and ideas indicated by the scientific accomplishments and narratives of African American scientists and a notable doctor, Charles R. Drew. The practical considerations described have implications for the disciplinary core ideas in the Next Generation Science Standards, and for understanding the cultural, social, and political values inherent in the nature of science.

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Exploring Data to Learn about the Nature of Science (C. Quinlan, 2016)

Biology is often taught as disconnected facts, even though the subject itself provides a holistic approach to the study of life, particularly through the overarching frame of evolution. The Framework for K–12 Science Education and Next Generation Science Standards promote a coherent approach to science that uses a developmental approach to learning. This is consistent with the use of data, reflective strategies, and a research inquiry approach that encourages students to confront their own thinking and reasoning, and thus encourages the engagement of argumentation in the classroom. This article presents narratives and classroom scenarios that might provide insights into learning strategies, with implications for a more cohesive approach to learning both biology concepts and the practices of science.

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An Interdisciplinary Investigation of African Rock Art Images to Learn about Science & Culture: Blending Biology, Geology, History & Ethics (C. Quinlan, 2019)

Image analysis of African rock art creates a unique opportunity to engage in authentic explorations of science and culture using rock art images as data. African rock art and its context provide insights into the intersection of science, scientific research, research ethics, intellectual property, law, government, economy, indigenous people, and crime. This article specifically considers the rock art and other cultural contributions of the San people of Southern Africa, which offer a rich interdisciplinary exploration of biology—including the climate and weather of biomes, plant biology, human physiology, and more. An understanding of the nature of science, crosscutting concepts, and disciplinary core ideas in the Next Generation Science Standards (NGSS) is implicated.

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More In Depth Spreadsheet Management Adaptation of Data Management using NEON Small Mammal Data

This adaptation consists of three exercises that introduce students to 1) format spreadsheet data tables, 2) carry out spreadsheet quality control, and 3) count/sort/filter data of interest in order to conduct a pilot analysis on NEON small mammal data.

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Marguerite Mauritz onto Ecosystem Ecology

Data Management using National Ecological Observatory Network's (NEON) Small Mammal Data with Accompanying Lesson on Mark Recapture Analysis

Students use small mammal data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by estimating small mammal population sizes using the Lincoln-Peterson model.

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Investigating Evidence for Climate Change (Project EDDIE)

This multi-part activity allows students to discover the relationships between CO2 and temperature and how these variables have changed over time using real-world data.

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The CARE Principles for Indigenous Data Governance

Abstract

Concerns about secondary use of data and limited opportunities for benefit-sharing have focused attention on the tension that Indigenous communities feel between (1) protecting Indigenous rights and interests in Indigenous data (including traditional knowledges) and (2) supporting open data, machine learning, broad data sharing, and big data initiatives. The International Indigenous Data Sovereignty Interest Group (within the Research Data Alliance) is a network of nation-state based Indigenous data sovereignty networks and individuals that developed the ‘CARE Principles for Indigenous Data Governance’ (Collective Benefit, Authority to Control, Responsibility, and Ethics) in consultation with Indigenous Peoples, scholars, non-profit organizations, and governments. The CARE Principles are people– and purpose-oriented, reflecting the crucial role of data in advancing innovation, governance, and self-determination among Indigenous Peoples. The Principles complement the existing data-centric approach represented in the ‘FAIR Guiding Principles for scientific data management and stewardship’ (Findable, Accessible, Interoperable, Reusable). The CARE Principles build upon earlier work by the Te Mana Raraunga Maori Data Sovereignty Network, US Indigenous Data Sovereignty Network, Maiam nayri Wingara Aboriginal and Torres Strait Islander Data Sovereignty Collective, and numerous Indigenous Peoples, nations, and communities. The goal is that stewards and other users of Indigenous data will ‘Be FAIR and CARE.’ In this first formal publication of the CARE Principles, we articulate their rationale, describe their relation to the FAIR Principles, and present examples of their application.

Keywords: Indigenous, data sovereignty, data governance, data principles, FAIR principles

How to Cite: Carroll, S.R., Garba, I., Figueroa-Rodríguez, O.L., Holbrook, J., Lovett, R., Materechera, S., Parsons, M., Raseroka, K., Rodriguez-Lonebear, D., Rowe, R., Sara, R., Walker, J.D., Anderson, J. and Hudson, M., 2020. The CARE Principles for Indigenous Data Governance. Data Science Journal, 19(1), p.43. DOI: http://doi.org/10.5334/dsj-2020-043

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Marguerite Mauritz onto Inclusive Science

Cultivating inclusive instructional and research environments in ecology and evolutionary science

Proof

Nathan Emery1 , Ellen Bledsoe2 , and Andrew Hasley3

Evolution and Ecology 2020

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Marguerite Mauritz onto Inclusive Science

The Power of Data Standards

Investigate data standards within the context of the Alpine Chipmunk and the Grinnell Study.

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Marguerite Mauritz onto For future class use

Plants in the Human-Altered Environment (PHAE): EREN-NEON Flexible Learning Project

A project to compare effects of a continuum of landscape alteration intensities on plant diversity, biomass, and ecosystem services, and to explore human socioeconomic connections to plants in the environment.

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Marguerite Mauritz onto For future class use

Lichens in Diverse Landscapes: EREN-NEON Flexible Learning Project

Interesting projects to use in the future

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Marguerite Mauritz onto For future class use

The CARE Principles for Indigenous Data Governance

Abstract

Concerns about secondary use of data and limited opportunities for benefit-sharing have focused attention on the tension that Indigenous communities feel between (1) protecting Indigenous rights and interests in Indigenous data (including traditional knowledges) and (2) supporting open data, machine learning, broad data sharing, and big data initiatives. The International Indigenous Data Sovereignty Interest Group (within the Research Data Alliance) is a network of nation-state based Indigenous data sovereignty networks and individuals that developed the ‘CARE Principles for Indigenous Data Governance’ (Collective Benefit, Authority to Control, Responsibility, and Ethics) in consultation with Indigenous Peoples, scholars, non-profit organizations, and governments. The CARE Principles are people– and purpose-oriented, reflecting the crucial role of data in advancing innovation, governance, and self-determination among Indigenous Peoples. The Principles complement the existing data-centric approach represented in the ‘FAIR Guiding Principles for scientific data management and stewardship’ (Findable, Accessible, Interoperable, Reusable). The CARE Principles build upon earlier work by the Te Mana Raraunga Maori Data Sovereignty Network, US Indigenous Data Sovereignty Network, Maiam nayri Wingara Aboriginal and Torres Strait Islander Data Sovereignty Collective, and numerous Indigenous Peoples, nations, and communities. The goal is that stewards and other users of Indigenous data will ‘Be FAIR and CARE.’ In this first formal publication of the CARE Principles, we articulate their rationale, describe their relation to the FAIR Principles, and present examples of their application.

Keywords: Indigenous, data sovereignty, data governance, data principles, FAIR principles

How to Cite: Carroll, S.R., Garba, I., Figueroa-Rodríguez, O.L., Holbrook, J., Lovett, R., Materechera, S., Parsons, M., Raseroka, K., Rodriguez-Lonebear, D., Rowe, R., Sara, R., Walker, J.D., Anderson, J. and Hudson, M., 2020. The CARE Principles for Indigenous Data Governance. Data Science Journal, 19(1), p.43. DOI: http://doi.org/10.5334/dsj-2020-043

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Alycia Crall onto Publications

2020 EDSIN December Community Call

Dr. Christie Bahlai described a project she and some of her colleagues received funding to lead. They will be creating a series of podcasts on "the human sides of data science" that will consist of a long-form interview and accompanying curriculum materials for classroom use. They plan "to showcase diverse people, perspectives and approaches to data and information." The call had members provide feedback on the podcast, using the prompts:

  • Is there anything you feel Christie and her team are overlooking with this project?
  • Any ideas on how curricula materials can be formatted using these data stories?
  • What questions should be asked as part of the interviews? Are there core areas that need to be addressed?
  • Do you have recommendations on individuals to interview or would you be interested in serving as an interviewee?

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Alycia Crall onto Community Calls

The Power of Data Standards

Investigate data standards within the context of the Alpine Chipmunk and the Grinnell Study.

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Amanda Braley onto BIOL 206 LAB

Cultivating inclusive instructional and research environments in ecology and evolutionary science

Proof

Nathan Emery1 , Ellen Bledsoe2 , and Andrew Hasley3

Evolution and Ecology 2020

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Kristin Jenkins onto QUBES Publications

Building Community-Based Approaches to Systemic Reform in Mathematical Biology Education

BMB, Fall 2020

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Kristin Jenkins onto QUBES Publications

Plants in the Human-Altered Environment (PHAE): EREN-NEON Flexible Learning Project

A project to compare effects of a continuum of landscape alteration intensities on plant diversity, biomass, and ecosystem services, and to explore human socioeconomic connections to plants in the environment.

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Amanda Braley onto BIOL 206 LAB

Lichens in Diverse Landscapes: EREN-NEON Flexible Learning Project

This project makes use of publicly-available datasets on lichen presence and abundance and wet deposition, paired with geospatial data on air quality, tree canopy cover, and locally collected field data, to better understand how lichens respond to changes

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Amanda Braley onto BIOL 206 LAB

Symbulation: An Agent-based Model of Evolving Symbionts

Symbulation is an agent-based model of endosymbionts that can evolve between parasitism and mutualism. It provides a web GUI so students can change environmental settings and watch evolution occur.

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Slide Template

This Google Slide template is available for you to use to create your report-out. The access is set to "View Only" so you will need to make a copy for your group to edit. You can do this by going to "File" and then "Make a Copy."

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Hayley Orndorf onto Working Group Report Outs

Intro to Data Types and Graphing Lab

Look at for modifying 110 ant lab

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Jennifer Kovacs onto Fall 2020

BUGSS Build-a-Genome Membership Application

This application is for attendees of the 2020 Build-a-Genome course who want a 6-month BUGSS membership to keep working on the project!

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Lisa Scheifele onto BAG at BUGSS lab 2020

Every Pixel- Stock Image Search Tool

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Deborah Rook onto Free Stock Images and Illustrations

Draw Kit Illustrations

LOTS of illustrations, but lots of scrolling.

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Deborah Rook onto Free Stock Images and Illustrations

All the Free Stock

Compilation site of useful free stock images, videos, and music.

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Deborah Rook onto Free Stock Images and Illustrations

Pixaby- "Stunning Free Images"

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Deborah Rook onto Free Stock Images and Illustrations

Lukaszadam Illustrations

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Deborah Rook onto Free Stock Images and Illustrations

Visual Hunt- Free Stock Photos

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Deborah Rook onto Free Stock Images and Illustrations

Undraw Illustrations

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Deborah Rook onto Free Stock Images and Illustrations

Accessible Teaching in the Time of COVID-19

Blog post with some practical tips focusing on accessibility but that are also connected to UDL

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The Why of UDL

A video that provides an overview of Universal Design for Learning and why it is important. 

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UDL Guidelines from CAST

At this link is a version of the guidelines with clickable headers and checkpoints. More information is provided for each guideline.

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How UDL Can Support Your Transition to Online Teaching

Crowd-sourced table of online teaching practices that align to the UDL guidelines specific to the affective network

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Jo Boaler's TEDx Stanford Talk

Jo Boaler discusses mathematical mindsets. Also linked is her website, youcubed with further information and resources

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The growing importance of data literacy in life science education

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Deborah Rook onto For FMNs- Other Useful Resources

Ideas For Group-based Data Analysis Project Assessment: The Carpentries Forum

This is a public discussion board in The Carpentries Forum.  The original question is "Ideas needed for assessment of group-based data analysis project".  I thought the responses would be of interest to many in this FMN.  

1 comments 9 reposts

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Deborah Rook onto For FMNs- Assessment

A Primer for Developing Measures of Science Content Knowledge for Small-Scale Research and Instructional Use

Bass et al. 2016.  This paper is an optional read for those very interested in assessment.  Of particular interest are Figure 2 (a process to think about/create assessment) and Table 3 (tips for writing multiple choice questions).  

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Deborah Rook onto For FMNs- Assessment

SERC's resources for assessment

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Deborah Rook onto For FMNs- Assessment

Stop telling kids you’re bad at math. You are spreading math anxiety ‘like a virus.’

Nice article that ends with a call for growth mindset, rather than math anxiety.

4 comments 20 reposts

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Deborah Rook onto FOR FMNs- Math Anxiety

Is math anxiety always bad for math learning? The role of math movitation

This is the primary lit article from the Science Daily summary Kaci posted.  

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Deborah Rook onto FOR FMNs- Math Anxiety

When people worry about math, the brain feels the pain

Math hurts - if you have anxiety about it.

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Deborah Rook onto FOR FMNs- Math Anxiety

BIOMAAP

The BIOMAAP program is an NSF funded project to develop materials and interventions to address math anxiety in our biology students.

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Deborah Rook onto FOR FMNs- Math Anxiety

MathBench

These modules introduce students (and anyone else who's interested) to the mathematical underpinnings of what they learn in introductory biology courses. But unlike a textbook, the modules are not full of equations and proofs. Instead, we try to bring math to life using intuitive approaches, everyday situations, and even humor. The modules contain hundreds of interactive activities, games, and questions. They range from the relatively simple (what to do with division) to the relatively abstruse (discrete diffusion models).

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Education resources on Data Nugget website

On our Data Nugget website we have a Resources page where we collect all of the great education resources that have come to our attention over the years. We'll be sure to update it with all the suggestions you share here! 

The resources are organized by the science or math concepts addressed, and we have a list of other great educational program websites.

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HHMI BioInteractive teacher guide for math and stats

Topics include measures of average (mean, median, and mode), variability (range and standard deviation), uncertainty (standard error and 95% confidence interval), Chi-square analysis, student t-test, Hardy-Weinberg equation, frequency calculations, and more. 

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EDSIN Community Connections

A resource for members to connect with each other based on your interests and expertise. The spreadsheet has three tabs. One (Topics of Interest) captures the topics proposed for discussion via our Slack group with links to notes from those discussions. The other two (Asks/Offers) are meant to offer a way to make requests (I would like help with..) and to let the community know what expertise you can offer (I can help with...). Members are invited to add content to the spreadsheet whenever you have content to add. 

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Alycia Crall onto Community

Course outline

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Lisa Scheifele onto BAG at BUGSS lab 2020

Lumina is setting aside $15 million over the next three years to help eradicate systemic racism

author:  Danette Howard

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Maggie Diamond-Stanic onto S-JEDI additional resources

OER - Open Educational Resources: Big List of Resources

from the University of Pittsburgh Library System

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The Neuroethics Blog

from the Emory University Center for Ethics

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Maggie Diamond-Stanic onto S-JEDI additional resources

How Can Professors Bring Anti-Racist Pedagogy Practices Into the Classroom?

Author: Sara Weissman

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Maggie Diamond-Stanic onto S-JEDI additional resources

Anti-racist Discussion Pedagogy Guide

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Maggie Diamond-Stanic onto S-JEDI additional resources

Racial Equity Tools

Produced by: Center for Assesment and Policy Development, MP Associates, and World Trust

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Maggie Diamond-Stanic onto S-JEDI additional resources

Building Organizational Capacity for Social Justice: Framework, Approach, and Tools

Author: Asian Americans / Pacific Islanders in Philanthropy National Gender and Equity Campaign

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Maggie Diamond-Stanic onto S-JEDI additional resources

COVID 19 at the molecular level

This collection of resources on the PDB 101 site focuses on COVID 19 from a molecular viewpoint.  There are 11 modules, ranging from hand washing to a deep dive into key molecular structures of the virus. (Image by David Goodsell)

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Kristin Jenkins onto COVID-19/Public Health

REMNet Newsletter August 2020

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Khuanchivin Geena Sompanya onto REMNet News

REMNet Newsletter July 2020

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Khuanchivin Geena Sompanya onto REMNet News

REMNet Newsletter June 2020

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Khuanchivin Geena Sompanya onto REMNet News

REMNet Newsletter May 2020

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Khuanchivin Geena Sompanya onto REMNet News

Engaging students in data exploration using digital biodiversity databases: BLUE Data Network

Slides for BLUE presentation at 2020 BIOME Institute: Cultivating Scientific Curiosity

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Amanda Braley onto BIOL 205L

Investigating human impacts on stream ecology: locally and nationally

TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally? This is an adaptation of the module that includes statistical testing and links sections to a lab report writing.

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Amanda Braley onto BIOL 206 LAB

Chemoreception

This module introduces the probability of cell and molecule collisions in the context of understanding chemoreception. It is intended for an introductory biology audience.

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Amanda Braley onto BIOL 205L

Water Quality Investigation (Project EDDIE)

This multi-part module aims to help you learn about water quality implications by understanding the variability of concentrations of nitrate in stream water through the evaluation of real-time data and identifying the reasons for this variability.

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Amanda Braley onto BIOL 206 LAB

5Qs: An Activity to Support Students Develop Skills to Interpret Research Observations

5Qs (five questions) is a simple pedagogy tool research mentors can use to help students think through their observations systematically, to draw supported conclusions, and to decide on next steps, all of which can be done independently by students.

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Amanda Braley onto BIOL 205L

The Hidden Kingdom: Island Biogeography with Fungi

In this activity, students will explore a dataset of fungi dispersal capabilities and colonizing success to test the predictions of island biogeography theory.

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Amanda Braley onto BIOL 206 LAB

Backyard Beetles + Pollinators: EREN-NEON Flexible Learning Project

Students observe insect pollinators and other floral visitors in their backyards, or campus, or nearby natural areas to describe plant-pollinator networks and assess how the assemblages from their sites compare to those in a range of landscapes.

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Amanda Braley onto BIOL 206 LAB

Lichens in Diverse Landscapes: EREN-NEON Flexible Learning Project

This project makes use of publicly-available datasets on lichen presence and abundance and wet deposition, paired with geospatial data on air quality, tree canopy cover, and locally collected field data, to better understand how lichens respond to changes

0 comments 3 reposts

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Amanda Braley onto BIOL 205L

Exploring HIV Evolution

In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset, then study the possible sources of HIV for these...

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Keith A. Johnson onto Genetics

DNA Subway Learning Resources

DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

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Keith A. Johnson onto Genetics

RNAseq data analysis using Galaxy

This is a bioinformatics exercise intended for use in a computer lab setting with life science majors.

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Keith A. Johnson onto Genetics

Using DNA Subway to Analyze Sequence Relationships

This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

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Keith A. Johnson onto Genetics

Bioinformatics: An Interactive Introduction to NCBI

Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide sequence from an insect endosymbiont by using BLAST

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Keith A. Johnson onto Genetics

Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts

Lesson on what it means for biological processes to be Poissonian, published in CourseSource

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Keith A. Johnson onto Genetics

Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching

This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to various classroom settings, published in...

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Keith A. Johnson onto Genetics

Homologous chromosomes? Exploring human sex chromosomes, sex determination and sex reversal using bioinformatics approaches

In this four- part guided activity, students will learn about the structure and function of human autosomal and sex chromosomes, view and interpret gene maps, and gain familiarity with basic bioinformatics resources and data through use of the...

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Keith A. Johnson onto Genetics

Atlas of Black Scholarship for Inclusive and Racially Diverse STEM Curricula – Volume I

The contributions of Black scientists to the advancement of STEM are poorly represented in course materials. Here, we provide an Atlas of Black Scholarship to help Life Sciences and Chemistry educators integrate Black scientists' work in their curricula.

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Jennifer Kovacs onto Fall 2020

Passion-Driven Statistics

E-book in .pdf format and customizable .iba format

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Jennifer Kovacs onto Spring 2021

Intro to Synthetic Biology

This course is for first year students and is intended to teach them how to think like a scientist and get them excited about biology. By no means is it a comprehensive Synthetic Biology course; rather, students explore basic molecular biology in the first third of the course, work through actual synthetic biology research in the second third, and apply their knowledge of this field to ethical issues in the last third.

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Dan Pierce onto Syllabi

CyVerse: Scalable Image Informatics

CyVerse Scalable bioinformatics

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Alice Tarun onto Posters BIOME 2020

Implementing a Math Prerequisite - Does it help or hurt?

Math prerequisite for Gen Bio in Community College

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Alice Tarun onto Posters BIOME 2020

Remote Teaching - Free Tech Resources (meta tagged by grade level, content area, etc.)

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Stacey Kiser onto Working From Home Resources

Conservation Biology and Ethics in Synthetic Biology

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Fran Sandmeier onto Ethics in synthetic biology

Colorado State University - Pueblo Population Genetics

An ethics case study is included in the course material.

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Fran Sandmeier onto Syllabi

Data is the New Science

In this module, students will be introduced to some emerging biodiversity data resources. They will be asked to think critically about the strengths and utility of these data resources and apply what they have learned to research question.

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J. Stephen Gosnell onto ideas for env 1003/1004

DataClassroom

OUR MISSION

Data skills are key to solving the biggest problems of tomorrow. DataClassroom exists to help students understand both those problems and how to unlock their solutions.

As data becomes an increasingly valuable resource across all fields, the teaching of data skills is becoming increasingly important for middle and high school classrooms. At the same time, as educators, we recognize that the best part of a science education will always be hands-on labs and authentic experimentation. DataClassroom provides teachers the opportunity to integrate next generation data-skills seamlessly with the learning experiences they are already creating. 

WHAT CAN DATACLASSROOM DO? 

The web-based app lets students engage with data and do real analysis. Even students with no statistics background can upload and visualize their own data, ask a question, and use a statistical test to form a conclusion. Your students will learn data analysis by doing data analysis.

While performing analysis with professional accuracy, the students are shown each step in the process through animations and are encouraged to think about what is being done, and why.

WHY IS IT DIFFERENT?

Our founder Aaron Reedy realized that classroom experiments were the lessons that most engaged science students and were often remembered even years later. He continually pushed his students to do better and bigger experiments in the classroom, but realized that available tools for data analysis were not built for kids. Now, with the demands of the Next Generation Science Standards, an even greater emphasis is placed on developing quantitative and analytical skills in the K-16 science education. Teachers and students need a tool that lets them analyze their data, but does not assume a graduate level knowledge of statistics.

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Christine Girtain onto Resources for working with data

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

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Lisa Scheifele onto The Scramble System

SCRaMbLEing of a Synthetic Yeast Chromosome with Clustered Essential Genes Reveals Synthetic Lethal Interactions

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Lisa Scheifele onto The Scramble System

SCRaMbLE generates evolved yeasts with increased alkali tolerance

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Lisa Scheifele onto The Scramble System

Nature Communications 2018 Yeast 2.0 Collection

A collection of 9 papers all describing improvements and applications of the Scramble system

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Lisa Scheifele onto The Scramble System

Unintended consequences of framing a utility-value intervention in two-year colleges

Canning, E. A., Priniski, S. J., & Harackiewicz, J. M. (2019). Unintended consequences of framing a utility-value intervention in two-year colleges. Learning and Instruction, 62, 37-48. https://doi.org/10.1016/j.learninstruc.2019.05.001

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COVID-19 Simulator (ISEE) Module

This accessible module guides students through exploring the COVID-19 Simulator developed by ISEE. Students dig into the four scenarios provided (including the parameters and the graphs), construct their own scenarios, and interpret their results.

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Joanna Wares onto COVID

Materials for Teaching the SIR Epidemic Model

This web page contains materials created by faculty of the University of Nebraska-Lincoln Department of Mathematics to teach basic fundamentals of mathematical epidemiology.

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Joanna Wares onto COVID

Understanding COVID-19 Biology to Design a Vaccine - Ethics supplement

The adaptation to Understanding COVID-19 Biology to Design a Vaccine entails two ethics supplements. The first supplement addresses the use of off-label drugs in the pandemic (or other situation). The second supplement addresses wet markets.

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Joanna Wares onto COVID

COVID-19 educational module | Department of Mathematics

This resource is a module you can use to teach your students the basics of epidemic behavior using a model geared specifically to Covid-19. Students can address key questions using pre-designed experiments.

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Joanna Wares onto COVID

Lumina is setting aside $15 million over the next three years to help eradicate systemic racism

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Maggie Diamond-Stanic onto S-JEDI learning community

Building Organizational Capacity for Social Justice: Framework, Approach & Tools

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Amphibian Diversity: Species Richness and Precipitation

This activity will explore how natural history specimen data can be used to investigate the relationship between precipitation levels in a region and species diversity of amphibians.

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Amanda Braley onto BIOL 206 LAB

Species Range Over Space and Time

used this Spring 2020

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Amanda Braley onto BIOL 206 LAB

Ferns are Everywhere

Using spatial fern population data in hypothesis testing

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Amanda Braley onto BIOL 205L

Testing hypotheses about the role of wildfire in structuring avian communities

This module assesses the role of wildfire in the eastern US and its impact on bird communities using NEON bird survey data from pre- and post- a major wildfire in the Great Smoky Mountains National Park (GRSM) in November 2016.

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Amanda Braley onto BIOL 206 LAB

Cleaning Biodiversity Data: Excel

Access and clean an open source polar bear dataset using Excel.

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Amanda Braley onto BIOL 206 LAB

Remote sensing data processing – NEON airborne data

Concepts of remote sensing and data logistics, and NEON remote sensing data are introduced. Students learn how to apply spatial data processing and visualization skills using R coding program to process NEON airborne data to address scientific questions.

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Amanda Braley onto BIOL 206 LAB

Why does Blood Flow Change? Investigating the Math of Blood Flow Dynamics

This collection of activities explores the relationship between blood flow, pressure, and the factors of resistance through graphs and modeling direct and inverse variation.

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Amanda Braley onto BIOL 205L

A New Phenology-focused CURE using Herbarium Specimen Data

phenology on-line

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Amanda Braley onto BIOL 206 LAB

Cleaning Biodiversity Data: A Botanical Example Using Excel or RStudio

Access and clean an open source herbarium dataset using Excel or RStudio.

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Amanda Braley onto BIOL 205L

Climate-Induced Shifts in California Butterflies

Jess Coyle using CODAP from 4DEE Extravaganza

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Amanda Braley onto BIOL 206 LAB

The “Problem” Woman of Colour in the Workplace

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The 5 Biases Pushing Women Out of STEM - Joan C. Williams

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CCURI: Community College Undergraduate Research Initiative

The Community College Undergraduate Research Initiative (CCURI) uses an inquiry-based teaching model where students are exposed to real world science through a case study in an introductory course followed by a hands-on research experience resulting from questions about or related to the case.  CCURI is providing resources for our 44 institutional partners including introductory workshops/conferences that are building regional and national collaborations, start-up supplies and a wide variety of faculty development opportunities.

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U-FERN: Undergraduate Field Experiences Research Network

The Undergraduate Field Experiences in Research Network (U-FERN) seeks to understand the impacts of these types of experiences and to build a community of practitioners working together with education researchers to share and develop effective practices that are inclusive of all students. 

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Ethics in synthetic genomics

This is an ethical reflection for students on an issue in genome engineering and the synthesis of potentially infectious viruses. The case study asks students to reflect on material in the linked article. Also included is the grading rubric.

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Keith A. Johnson onto Genetics

Where Are All the Faculty in the Open Education Movement? - Jasmine Roberts

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What Black scientists want from colleagues and their institutions - Virginia Gewin

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Why So Many Organizations Stay White - Victor Ray

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SENCER - Science Education for New Civics Engagements and Responsibilities

SENCER, the signature initiative of the National Center for Science & Civic Engagement, is a national project focused on empowering faculty and improving STEM teaching and learning by making connections to civic issues.

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Science in the Classroom (SitC) - American Association for the Advancement of Science

Annotated research papers and accompanying teaching materials.  A  collection of freely available annotated research papers from the Science family of journals

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Deeper Learning, OER, Open Educational Practice By: Lisa Petrides, Amee Evans Godwin, and Cynthia Jimes

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EDSIN Community Call 06-29-20

Alycia Crall and Carrie Diaz Eaton provided updates on what has been accomplished this past year, what our plans are over the next few months, and ways you can engage with the network moving forward. 

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Alycia Crall onto Community Calls

Redlining and Climate Change

Environmental Racism

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Tamara Basham onto ENVR 1402

Analyzing current and past climate data (Project EDDIE)

Students analyze current and past temperature and CO2 data to relate current climate change to climate of the past 450,000 years. Objectives: Are global temperatures and CO2 levels rising? How are they related? How is current and past warming related?

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Gina Woodard onto Bio IS 6 / APES Unit 9

Too much of a good thing? Exploring nutrient pollution in streams using bioindicators

Water quality & monitoring; benthic inverts indicators; eutrophication

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Gina Woodard onto APES Unit 8

Social Distancing Simulation in NetLogo

public health & epidemiology

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Gina Woodard onto APES Unit 8

How does increasing atmospheric carbon dioxide disrupt ecological systems? Results from FACE experiments across the globe.

This module synthesizes key findings from forested CO2 enrichment experiments over the last 3 decades. Students should have a basic working knowledge of climate change, ecosystem nutrient cycles and plant-fungal relationships to complete the assignment.

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Gina Woodard onto APES Unit 9

Intro to Data Types and Graphing Lab

This is the third lab in an Introductory Physical Geography/Environmental Studies course. It introduces students to different data types (qualitative vs quantitative), basic statistical analyses (correlation analysis s, t-test), and graphing techniques.

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Gina Woodard onto APES data & computation

Understanding COVID-19 Biology to Design a Vaccine

Emphasis on central dogma

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Gina Woodard onto Bio IS 4

Vertebrate Clade Race

This activity introduces basic tree reading skills for evolutionary phylogenies. It is designed as a short group activity. After completing this activity, students should be familiar with basic terminology and how to "read" a phylogenetic tree.

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Gina Woodard onto Bio IS 3

The Happy Blue Baby Hemoglobin

This case, about a specific mutant of hemoglobin, focuses on visualizing and understanding the molecular basis of why an infant turned blue soon after birth and how the cyanosis resolved.

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Gina Woodard onto Bio IS 4

My Twin Sister Case Study

A young boy wonders why his twin sister can roll his tongue, but he cannot. Case centers on meiosis.

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Gina Woodard onto Bio IS 4

Sizes, Scales, and Specialization: An activity highlighting the diversity in cell types

This module explores how cell size and shape varies across cell types in the human body by having students calculate relative proportions of numbers in scientific notation.

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Gina Woodard onto Bio IS 5

Understanding COVID-19 Biology to Design a Vaccine - Ethics supplement

The adaptation to Understanding COVID-19 Biology to Design a Vaccine entails two ethics supplements. The first supplement addresses the use of off-label drugs in the pandemic (or other situation). The second supplement addresses wet markets.

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Gina Woodard onto COVID-19/Public Health

Redlining and Climate Change

Students examine social justice & equity issues involving climate change

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Gina Woodard onto Bio IS 6 / APES Unit 9

Understanding Global Climate Change: Present, Past, and Future

Understanding global climate change through the lenses of the present, past, and future, combining modern technology and indigenous knowledge and ways of knowing.

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Gina Woodard onto Biology: Data Lessons

BioSkills Guide

The BioSkills Guide comprises program- and course-level learning outcomes for the Vision and Change core competencies that elaborate what general biology majors should be able to do by the time they graduate.

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Shivani Sharma onto Skills

Another Information is Beautiful take on COVID 19

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Kristin Jenkins onto COVID-19/Public Health

Open Pedagogy Notebook

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Whose Knowledge is Reliable? - Siko Bouterse 

Part of OpenCon 2017's Diversity, Equity and Inclusion in Open Research and Open Education panel.

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Open Pedagogy and Social Justice

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The Key Podcast - Ep 13: Equity and Higher Education Policy

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Centering a Critical Curriculum of Care During Crises

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Tool for Organizational Self-Assessment Related to Racial Equity

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Doing Evaluation Differently

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Can we decolonize OER/Open? #DecolonizeOpen

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Biological, Universal, and Inclusive Learning in Data Science - group on QUBES

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UDL progression rubric - where are you at now?

Rubric to help you see where you lie along the continuum of UDL best practices. Novak & Rodriguez 2018.

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Universal Design for Learning Guidelines

The UDL Guidelines are a tool used in the implementation of Universal Design for Learning, a framework to improve and optimize teaching and learning for all people based on scientific insights into how humans learn.

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WAVE Web Accessibility Evaluation Tool

WAVE is an accessibility evaluation tool from WebAIM. Just enter a url into the tool and WAVE will provide you with a report of adherence with Web Content Accessibility Guidelines (WCAG) and suggest changes for improvement. 

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WAVE Web Accessibility Evaluation Tool

WAVE is an accessibility evaluation tool from WebAIM. Just enter a url into the tool and WAVE will provide you with a report of adherence with Web Content Accessibility Guidelines (WCAG) and suggest changes for improvement. 

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Hayley Orndorf onto Tools and Resources

Accessibility Toolkit

The goal of the Accessibility Toolkit – 2nd Edition is to provide resources for each content creator, instructional designer, educational technologist, librarian, administrator, and teaching assistant to create a truly open textbook—one that is free and accessible for all students.

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Mendelian Genetics, Probability, Pedigree, and Chi-Squared Statistics

A lesson that requires students to work through a series of questions pertaining to the genetics of sickle cell disease and its relationship to malaria.

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Keith A. Johnson onto Genetics

What Black scientists want from their colleagues and their institutions

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White Supremacy Culture by Tema Okun, changeworkDR

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Diverse Book Finder

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Working In Science Was A Brutal Education. That’s Why I Left.

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Textbook Broke: Textbook Affordability as a Social Justice Issue

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Changing our (Dis)Course: A Distinctive Social Justice Aligned Definition of Open Education

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UDL on Campus - Universal Design for Learning in High Education

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Open to What? A Critical Evaluation of OER Efficacy Studies

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CyVerse ReadTheDocs

Documentation for the CyVerse platform

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Tyson Lee Swetnam onto ReadTheDocs

BisQue

YouTube playlist of videos on BisQue

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Tyson Lee Swetnam onto Webinars

Focus Forum Webinars

YouTube playlist of Focus Forum Webinars

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Tyson Lee Swetnam onto Webinars

Advanced Concepts in Cyberin Infrastructure

YouTube Playlist on ACIC course

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Tyson Lee Swetnam onto Webinars

Spatial Data Analysis

YouTube playlist on spatial data analysis in Cyverse

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Tyson Lee Swetnam onto Webinars

Powered by CyVerse

Playlist of videos about Powered by CyVerse

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YouTube playlist of NANODJ (Spanish version)

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Tyson Lee Swetnam onto Webinars

CyVerse for Teaching and Research

Playlist of videos for teaching and research

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Tyson Lee Swetnam onto Webinars

CyVerse for Developers and Power Users

Playlist of videos for Developers and Power Users

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Visual Interactive Computing Environment (VICE)

YouTube playlist on using CyVerse VICE

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Using Containers in CyVerse

YouTube playlist of videos on using containers in CyVerse

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Tyson Lee Swetnam onto Webinars

Notebooks in CyVerse

YouTube playlist of videos on using computational notebooks in CyVerse

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Workflow Management

YouTube playlist of Workflow Management

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Tyson Lee Swetnam onto Webinars

Managing your Data in CyVerse

YouTube playlist on Managing your data in CyVerse

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Tyson Lee Swetnam onto Webinars

Image Analysis and Phenotyping

YouTube playlist on image analysis and phenotyping

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Tyson Lee Swetnam onto Webinars

Genomics & Genomic file manipulation

YouTube playlist on Genomics

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Tyson Lee Swetnam onto Webinars

Metagenomics

YouTube playlist on Metagenomics

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Tyson Lee Swetnam onto Webinars

Transcriptomics

YouTube playlist on Transcriptomics

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Tyson Lee Swetnam onto Webinars

Assembly and Variant Detection

YouTube playlist on Assembly and Variant Detection

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Tyson Lee Swetnam onto Webinars

Genome Annotation

YouTube videos on Genome Annotation in CyVerse

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Tyson Lee Swetnam onto Webinars

Machine Learning

YouTube videos on ML in CyVerse

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Tyson Lee Swetnam onto Webinars

Re-envisioning Diversity in Higher Education: From Raising Awareness to Building Critical Consciousness Among Faculty - by Dana M. Stachowiak

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Getting Started with CyVerse

Playlist of Videos

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Tyson Lee Swetnam onto Webinars

Understanding Structural Racism - TEDx talk by Luiza Lodder

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Leading Courageous Conversations on Race Equity - The Community Nonprofit New York Knowledge Center

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Anti-Racism Defined - Alberta Civil Liberties Research Centre

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Fantastic Birds and Where to Find Them

5E lesson plan for middle/high school aligned to NGSS standards.

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Carla Case-Sweeney onto HS BIO

Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2

Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5 hours. Level: undergraduate students majoring in biology.

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Steven M Caruso onto Online Genetics Lab

Fear of the CURE: A Beginner’s Guide to Overcoming Barriers in Creating a Course-Based Undergraduate Research Experience†

"Here, we will review the perceived challenges of developing a CURE and provide practical strategies to overcome these challenges."

Govindan, B., Pickett, S., and Riggs, B. 2020 JMBE Vol21(2) DOI: https://doi.org/10.1128/jmbe.v21i2.2109

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White Academia: Do Better - Jasmine Roberts

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Dastaset resources

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Designing a case

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Facilitaing cases tips

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Adapting cases

thoughts on adapting existing cases

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Hardy-Weinberg Equilibrium: a swirl resource

Students will use swirl to understand Hardy-Weinberg equilibrium. The lesson starts with observed numbers of individuals for each genotype, and students will work through a number of steps to assess whether or not the population is in equilibrium.

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Erika Crispo onto evolution

Ecology Resources

A collection of ecology modules that are ready or adaptable for online learning.

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Maria-Veronica Ciocanel onto Math bio resources

Linear Models and Linear Mixed Effects in R: Tutorial 1

The first of two tutorials that introduce you to linear and linear mixed models.

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Maria-Veronica Ciocanel onto Matlab

Computing tools (MATLAB)

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Maria-Veronica Ciocanel onto Matlab

Trout modeling example

This is an open-ended modeling example using difference equations and Algebra II skills.

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Maria-Veronica Ciocanel onto Math bio resources

COVID-19 educational module | Department of Mathematics

This resource is a module you can use to teach your students the basics of epidemic behavior using a model geared specifically to Covid-19. Students can address key questions using pre-designed experiments.

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Maria-Veronica Ciocanel onto Covid-19 resources

2019 EDSIN Conference Proceedings (.docx)

Bringing Conversations on Diversity and Inclusion in Data Science to the Ecological and Environmental Sciences, was a 3-day conference hosted at the University Corporation for Atmospheric Research’s (UCAR) Center Green in Boulder, Colorado, April 2-4, 2019. Please not that these proceedings have also been uploaded as a PDF file. 

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2019 EDSIN Conference Proceedings (.pdf)

Bringing Conversations on Diversity and Inclusion in Data Science to the Ecological and Environmental Sciences, was a 3-day conference hosted at the University Corporation for Atmospheric Research’s (UCAR) Center Green in Boulder, Colorado, April 2-4, 2019. Please not that these proceedings have also been uploaded as a Word file. 

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Presenting on Zoom Tips

Are you presenting something via a Zoom call? Check out this article for some helpful tips.

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Olivia Jenkins onto Working From Home Resources

How to Make the Most of Attending Online Virtual Conferences

This article outlines ways to have the best experience attending an online conference, such as BIOME Institute 2020!

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Olivia Jenkins onto Working From Home Resources

Working From Home Tips

This video gives tips from a productivity expert about how to effectively work from home.

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Olivia Jenkins onto Working From Home Resources

Zoom Etiquette and Best Practices

Tips about being professional and efficient on Zoom for both meeting hosts and attendees.

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Olivia Jenkins onto Working From Home Resources

EDSIN Slack Quick Start Guide

The EDSIN slack group is a place for members and those interested in diversity, equity, and inclusion in environmental and data science fields to ask questions, share resources, opportunities and more. If you’re new to Slack or simply overwhelmed by the prospect of yet another Slack group, this document contains some quick pointers to help you to configure and use the tool in a way that works best for you. They’re in 3 key areas:

  1. Configuring your account
  2. Notification settings
  3. Communicating with others

Any questions? Email: acrall@battelleecology.org

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Alycia Crall onto Community

Striped Bass: A Regulatory Success Story

This module examines the Maryland striped bass moratorium (1985-1989) as a fisheries management success story. Maryland DNR striped bass young of the year data is utilized for least squares linear regression analysis.

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Olivia Jenkins onto Ecology Resources

How Many Salamanders are in the forest? Testing capture-recapture

Collecting data on how populations respond to environmental change requires accurate estimates of population sizes. This activity explores one method for estimating population sizes across three different localities.

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Olivia Jenkins onto Ecology Resources

Competition under the Sea: Exploring the competitive interaction between native and non-native seagrasses in the Caribbean

A mini-case study that uses real-world data to explore the competitive interaction among seagrasses.

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Olivia Jenkins onto Ecology Resources

Malawian Aquaculture Pond Ecosystem Challenge

This case study challenges students to design a pond that will provide supplemental food security to a rural Malawian village. In the process they apply concepts of primary and secondary production, trophic efficiency, trophic levels and sustainability.

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Olivia Jenkins onto Ecology Resources

NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey

Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination and Jaccard index is performed using R.

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Olivia Jenkins onto Ecology Resources

Mosquito Vector Ecology of the East Coast using NEON

This data module examines the relationship between mosquito vector ecology and climate across the east coast of the United States. The module is designed to merge core concepts in ecology with budding interests of the largely pre-heath student body.

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Testing hypotheses about the role of wildfire in structuring avian communities

This module assesses the role of wildfire in the eastern US and its impact on bird communities using NEON bird survey data from pre- and post- a major wildfire in the Great Smoky Mountains National Park (GRSM) in November 2016.

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Globally endangered sea turtles of the Palmyra Atoll National Wildlife Refuge: A Focus on Scientific Analysis

in this exercise students will make suggestions for designing a comprehensive research program, use survey data, critically analyze results, and devise methods for study.

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Olivia Jenkins onto Ecology Resources

Investigating the Ecology of Mosquitoes and Birds in Hawaii

Examining biotic and abiotic environmental factors explain the historic, present, and future prevalence and range of avian malaria in Hawaii. The activity also asks how this affects local endangered bird populations.

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Olivia Jenkins onto Ecology Resources

Demography from physical cemeteries, "virtual cemeteries," and census data

Laboratory experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 8

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Olivia Jenkins onto Ecology Resources

Investigating Sexually Transmitted Disease (STD) Ecologies Using Geographic Information Systems (GIS) (Abstract) | TIEE

Identifying, mapping and understanding the magnitude and the spatial prevalence of the Sexually Transmitted Diseases (STDs) such as chlamydia and gonorrhea diseases. Analyzing the spatial trends of the disease patterns at National, State and...

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Olivia Jenkins onto Ecology Resources

Diseasebots

This module explores the effects of host density on contact rates and transmission of pathogens or mutualist symbionts using a hands-on simulation, a computer agent-based model in NetLogo, and an authentic ecological dataset.

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The Effect of Climate Change on Butterfly Phenology

In this module, students explore changes in butterfly phenology through the use of natural history collections data. The resource I have modified is a pptx presentation to introduce the background and an updated student pre-lab assignment.

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Phenotypic plasticity and predation

Students predict changes to tadpole morphology and coloration after considering characteristics of the predator species and the prey themselves then test their own hypotheses (typically with t-tests or ANOVA) by collecting novel data via image...

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Leaf cutter ant foraging

This module introduces students to leaf-cutter ants in the rainforests of Panama. Students derive their own research hypotheses regarding ant foraging or allometric scaling relationships.

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Dendroclimatology

Dendroclimatologists can reconstruct climate records further into the past than written records, by examining tree rings. Students "reverse-engineer" this process by considering growth rates of a tree species in response to various...

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Olivia Jenkins onto Ecology Resources

Fantastic Birds and Where to Find Them

text

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Fantastic Birds and Where to Find Them

5E lesson plan for middle/high school aligned to NGSS standards.

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Resources from Pitt's "Creating Accessible Courses for Remote Learning" Webinar

Attached are two infographics with some basic information about digital accessibility and course design for remote learning. These were provided for the workshop, "Creating Accessible Courses for Remote Learning" offered by the University of Pittsburgh. 

Suggestions from Angie Bedford-Jack on Digital Accessibility:

  • Start simple by using built-in heading structures, adding alt-text to images, and ensuring that hyperlinks make sense out of context.
  • Use built-in accessibility checkers in Microsoft Word and Canvas. 
  • Share Zoom keyboard short-cuts with others

Suggestions from Dr. Tinukwa Boulder on Cognitive Accessibility:

  • In your Learning Management System, keep navigation as simple as possible, avoiding redundancy and hiding components you are not using. 
  • Aim for clarity in design and content. 
  • Remember challenges posed by synchronous instruction: 
    • The inability to pause, rewind, review
    • People are often afraid to interrupt to ask questions/clarify in ways that they would in person
    • Delay in providing accommodations to students with disabilities
    • Equity-based issues 

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Galapagos Finch Evolution

Evolution finches evolution HHMI

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Figure of the Day: Identifying Ambiguity and Biases in Data Figures

The adaptation focuses on presenting figures with all the information in their axes. However, such figures present a medium level of quality to encourage students to discuss conceptually in groups and come up with suggestions on how to improve them.

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Origin and Diversity of Armor in Girdled Lizards

The girdled lizards (Cordylidae) are a family of distinctively armored lizards endemic to Sub-Saharan Africa. Students examine lizards in this family to classify the lizards based on morphological characteristics.

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Exploring Population Change without Selection: Avida-Ed Lab Book Exercise 4

An introductory activity exploring how a population changes without natural selection using the Avida-ED simulation.

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Cases from the National Center for Case Study Teaching in Science

Does this overwrite?

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How to spot conspiracy theories

How to Spot COVID-19 Conspiracy Theories, authored by Stephan Lewandowsky, John Cook, Ullrich Ecker, and Sander van der Linden, looks at possible examples of COVID-19 conspiracy theories, and identifies how they illustrate the seven traits of conspiratorial thinking,

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Demography from "virtual cemeteries"

Seeing if this overwrites abstract.

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Exploring Population Change without Selection: Avida-Ed Lab Book Exercise 4

An introductory activity exploring how a population changes without natural selection using the Avida-ED simulation.

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Summer 2019 Biobytes

this is a series.

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Movement: Nature's Flying Machines

Might use this in ecology.

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Avida-ED Experimental Evolution Project

Outline to a research project based on Avida-ED's digital organisms

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CHORDS Portal: Seamless Real-Time Data Streaming

CHORDS is a real-time data service for the geosciences that provides an easy-to-use system to acquire, navigate, and distribute real-time data via cloud services and the Internet. CHORDS aims to lower the barrier to these services, especially for small instrument teams, and broaden access to real-time data for the geosciences community.

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3D Printed Automated Weather Station (PAWS)

Accurate and reliable real-time monitoring and dissemination of observations of surface weather conditions is critical for a variety of societal applications.

The US National Weather Service (NWS) International Activities Office (IAO) in partnership with University Corporation for Atmospheric Research (UCAR)/National Center for Atmospheric Research (NCAR) and funded by the United States Agency for International Development (USAID) Office of Foreign Disaster Assistance (OFDA) has started an initiative to develop and deploy low-cost weather instrumentation in sparsely observed regions of the world.

Instrumentation is being designed using innovative new technologies such as 3D printers, Raspberry Pi computing systems, and wireless communications.

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Curriculum: Calling Bullshit-The Art of Skepticism in a Data Driven World

Course developed by Carl T. Bergstrom and Jevin West. The aim of the course is to teach you how to think critically about the data and models that constitute evidence in the social and natural sciences.

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B(ui)LDS: Biological, Universal, and Inclusive Learning in Data Science

An EDSIN partner focused on the exchange of ideas and resources supporting biological and environmental data science education, grounded in practices of universal design for learning and inclusive pedagogy. As part of our commitment to accessible, affordable student-driven education that connects learners to a larger world outside of their classrooms, and inspires them to be transformative; we promote the creation and use of Open Educational Resources (openly licensed learning materials), and the incorporation of Open Pedagogy and Open Science into our teaching practices.

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Actually, Data Science CAN Be Accessible: Barriers to inclusion of people with disabilities in the data science workforce pipeline and ideas for lowering them

Presentation by EDSIN member Drew Hasley that draw on personal experience as a student and professional with a severe visual impairment and knowledge gained from colleagues and friends during ongoing efforts in the area of accessible teaching in quantitative biology. This was a keynote presentation at the 2019 EDSIN conference.

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Inclusive Pedagogy for Life Science Education Tagging Ontology

Inclusive pedagogy for life science education tagging ontology developed by EDSIN members Carrie Diaz Eaton, Sharon Rivera, and Bryan Dewsbury

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Brian Dewsbury's Resources on Inclusion

A list of material in various platforms that help to inform developing thoughts on the ways in which social structure affects the nature of teaching and learning.

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Ontology for UDL and Related Content

This is a description of tagging ontology that can be used for Universal Design for Learning (UDL) resources created by EDSIN member Drew Hasley

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STEM Inclusive Teaching Practices Webinar Series: Episode One

Episode One was a conversation with Bryan Dewsbury (University of Rhode Island) one of the authors of the CBE-LSE Inclusive Pedagogy guide moderated by Carrie Diaz Eaton. We talked with him about inclusive teaching practices, and he answered questions about implementation in the STEM classroom. We appreciate that all of our personal and professional lives have been disrupted by the pandemic, so we will also spend time talking about how to think about inclusion in the times of COVID-19.

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Universal Design for Learning Guidelines

The UDL Guidelines are a tool used in the implementation of Universal Design for Learning, a framework to improve and optimize teaching and learning for all people based on scientific insights into how humans learn. Learn more about the Universal Design for Learning framework from CAST. The UDL Guidelines can be used by educators, curriculum developers, researchers, parents, and anyone else who wants to implement the UDL framework in a learning environment. These guidelines offer a set of concrete suggestions that can be applied to any discipline or domain to ensure that all learners can access and participate in meaningful, challenging learning opportunities.

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B(ui)LDS: Biological, Universal, and Inclusive Learning in Data Science

We are a community for the exchange of ideas and resources supporting biological and environmental data science education, grounded in practices of universal design for learning and inclusive pedagogy. As part of our commitment to accessible, affordable student-driven education that connects learners to a larger world outside of their classrooms, and inspires them to be transformative; we promote the creation and use of Open Educational Resources (openly licensed learning materials), and the incorporation of Open Pedagogy and Open Science into our teaching practices.

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Center for Scientific Collaboration and Community Engagement

The Center for Scientific Collaboration and Community Engagement (CSCCE) is a research and training center to support and study the emerging field of scientific community engagement.

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AGU Ethics and Equity Center

The AGU Ethics and Equity Center provides resources to educate, promote and ensure responsible scientific conduct and establish tools, practices, and data for organizations to foster a positive work climate in science. They can help you meet your ethics goals, whether you are an individual scientist looking for resources or professional ethics development, a leader looking to implement best practices at your organization, or an institution wanting to update your code of conduct. The Center is led by AGU.

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Academic Data Science Alliance

The Academic Data Science Alliance (ADSA) was launched in May 2019 to provide an independent national resource network for academic data science leaders, practitioners, and educators to connect and exchange ideas, and to advance the uptake of data science best practices in higher education. ADSA seeks to support university researchers in their efforts to learn, use, and teach data-intensive tools and responsible applications. Our ultimate goal is to bring about the institutional changes needed to integrate data science into university research and training. By building networks of academic data science practitioners (including faculty, students, staff, and administrators), ADSA enables better sharing of knowledge, ideas, and lessons learned.

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CSCCE blog posts and tip sheets on Diversity, Equity, and Inclusion

Diversity, Equity and Inclusion (DEI) should be central considerations when planning and supporting any scientific community. The Center for Scientific Collaboration and Community Engagement's (CSCCE) resources on this topic include blog posts and tip sheets (i.e., inclusive marketing, member recruitment, childcare at scientific meetings, decolonizing international research collaborations) to help you to nurture more inclusive communities. 

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Scientific Meetings for All

A publication in EOS on inclusive scientific meetings that features the 2019 EDSIN conference.

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NSF INCLUDES Coordination Hub

Presenter: Gary Silverstein, Westat and Coordination Hub Team

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National Ecological Observatory Network: Data & Infrastructure to Understand Changing Ecosystems

Presenter: Megan A. Jones, Battelle/NEON  

Abstract: NEON, the National Ecological Observatory Network, is an NSF-funded large science facility, operated by Battelle, is designed to collect extensive ecological and environmental data from across the U.S. for the next 30 years. A primary product of NEON is freely available, open access data for use by the scientific research community as well as by students and others who will explore the petabytes of information that will be available during the lifetime of the Observatory. Using NEON data, however, may not be an easy task for researchers, faculty, and students who are not familiar with “big data” access, management and analytic methods. Many ecologists are transitioning to using data science and big data methods including programming-based data management and analysis, complex data portals and APIs that provide access to lots of different types of data, and diverse analytical methods beyond those classically used in their individual research area. Furthermore, ecological data is usually messy in the sense that variability and uncertainty are important components of data analysis and interpretation. Given these challenges, how do we accelerate the use of big data in ecological research and education? How to we create equitable opportunities for data and resource access to all interested individuals? How do we engage communities that have not traditionally been drawn to careers in ecology but for which data science focused careers may provide new opportunities?

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Summary of the National Academies Report on Data Science for Undergraduates

Presenter: Louis Gross, University of Tennessee  

Abstract: Under the auspices of the National Academies, a Committee developed a consensus report regarding means to enhance undergraduate programs in the emerging discipline of data science. Building upon advice from a variety of on-line and in-person interactions with a broad spectrum of experts, the report provides a collection of findings and recommendations for initiating, developing and evaluating programs that prepare students for careers in data science as well as encouraging methods for all undergraduates to be exposed to basic concepts in this field. I will summarize the suggestions made regarding development of data acumen, incorporation of real-world examples, enhancing teamwork and communication, ethical considerations, and assessment and evaluation of data science programs. I will emphasize the potential for such programs to broaden participation in quantitative science and the benefit of utilizing environmental data and examples that align with the interests of diverse students.

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Make Student Thought Process Visible Using Video Recording

Presenter: Hong Qin, University of Tennessee at Chattanooga

Abstract: Dr. Qin presents his experience of integrate screen-recording to enhance student learning experience of computational biology. Students were required to screen-recording their process of solving computational problems. These screen-recordings can be used to identify the learning hurdles of students and improve student learning experiences.

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Understanding the Dynamics of Socio-Epidemiological Systems

Presenter: Carlos Castillo-Chavez

Abstract: The spread of fads, scientific ideas and the growth and stability of communities can also be understood as contagions. In this talk, I would focus on contagion in all its glory, including its role on building communities of mentors and understanding the role that initial conditions should play in our definition of meritocracy.

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Asset Mapping: A Simple Tool for Recruiting & Retaining Underrepresented Populations in STEM

Presenters: Adrienne Smith, Cynosure Consulting and Rebecca Zulli Lowe, Cynosure Consulting

Abstract: Asset maps serve as a simple, yet impactful tool for helping underrepresented groups connect with important people, programs, and resources that would support their recruitment and retention in STEM. In contrast to a traditional deficit-focused mindset, asset mapping was born out of an approach that seeks out existing strengths and works to build capacity by leveraging current resources as a foundation for further innovation. At the end of this talk, individuals will walk away with a list of steps that they can use to develop a comprehensive map that could be distributed immediately to current and future STEM (including high school seniors). These steps include identifying current assets within an array of existing categories (e.g., tutoring centers, individual faculty mentors, local chapters of STEM associations) designed to help mappers think expansively about existing supports. Additional steps involve reviewing contact lists and asking others to assist in the identification of assets, performing internet searches of the school/organization website looking for key words, and reading through the university directory to highlight offices that work on diversity issues or support the individuals targeted. The assets can be plotted directly onto a campus map and supplied to underrepresented groups, so they are aware of and can locate the resources and supports available to them. Additionally, the formation of the maps can be a beneficial exercise for departments to use to assess their own assets and strategically plan for the development of new assets.

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UW Data Science for Social Good

Presenters: Sarah Stone and Anissa Tanweer, University of Washington

Abstract: Launched in Summer 2015, the UW Data Science for Social Good (DSSG) program partners eScience Data Scientists and Student Fellows from across the country with Project Leads from academia, government, and the private sector to find data-driven solutions to pressing societal challenges. Previous projects (15 over the past 4 summers) have involved data analysis and visualization on topics such as transportation, public health, sustainable urban planning, homelessness, and disaster response. Several projects have led to long-term collaborations and funding opportunities. Integrated project-based discussions and training around data science ethics, human-centered design and stakeholder collaboration are keystones of our DSSG program. Differences in prior experience and training among student fellows can pose a challenge, but often become a strength in the context of project work. Our experience running this program supports the notion that DSSG programs can both effectively impact social good and provide "real world" data science training for students from diverse disciplinary backgrounds.

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Actually, Data Science CAN Be Accessible: Barriers to Inclusion of People with Disabilities

Presenter: Drew Hasley  

Abstract: If you were designing a course or employee training that introduces participants to writing and executing code, statistical analyses, and data visualization, what would you do to make it inclusive of participants with disabilities? What sorts of accessibility issues might you anticipate? How might you address them before you even know who the participants are? Why shouldn’t you just wait until you have a participant with a disability and work with them directly to make accommodations? Confidently answering such questions can be daunting. It requires knowing what disability is, awareness of some barriers to participation in data science by people with disabilities, some knowledge of tools and strategies for lowering those barriers, and above all, creativity. In this talk, I will address each of these, drawing on personal experience as a student and professional with a severe visual impairment, and knowledge gained from colleagues and friends during ongoing efforts in the area of accessible teaching in quantitative biology. Audience members will leave this talk with a better understanding of barriers to recruitment and training of people with disabilities in data science and some tools and strategies to lower them. They will also learn about areas requiring more attention. My primary goal is to leave audience members with the confidence that they can indeed help address the substantial underrepresentation of people with disabilities in this vital, growing field.

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In Pursuit of Inclusive Excellence in the Environmental Sciences

Presenter: Melvin Hall, Northern Arizona University

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Centering Historically Underrepresented Voices in the Salish Sea

Presenter: Melissa Watkinson, Salish Sea DEI Community of Practice

Abstract: Addressing inequity and working toward environmental justice is essential to a successful environmental movement. Currently, there are significant disparities in the representation, content, and processes for implementing diversity, equity, and inclusion (DEI) within the environmental field across the Salish Sea and the Pacific Northwest Coast. Although professionals in this field are aware and concerned about issues related to DEI, there is an overall lack of understanding for how to integrate these concepts into the environmental workforce. Addressing inequity and working toward environmental justice is essential to a successful environmental movement. We believe that by creating and fostering a Salish Sea DEI Community of Practice (CoP), we can begin to build this critical foundation together.

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Building a Diverse Undergraduate Community of Learners in Data Science & Biology

Presenter: Sarah R. Supp, Denison University

Abstract: This talk will use two examples to discuss inclusive pedagogical strategies for training in data science skills. Building a new interdisciplinary program for undergraduates in data analytics, we have a project-based pedagogy, and as a unit have considered ways in which we can spark interest and build academic successes for students more broadly, including students that are traditionally underrepresented in the Computer Sciences, or other related technical fields. This talk will also discuss an ongoing project to address gaps in training for undergraduate instructors, to enhance data education in biology curriculum, thus also broadening access to technical skills for students in these courses.

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Data Science Teaching Alternatives from The Carpentries

Presenters: Tracy Teal, Kari L. Jordan, and SherAaron Hurt, The Carpentries

AbstractTraining for data skills is more critical now than ever before. In the past decade, we've seen the creation of certification and graduate programs for data science, as well as a plethora of interactive, self-paced online learning platforms. Today's learners are often learning on the job and need the flexibility of short, or self-paced learning experiences. Research results, however, stress the importance of guided instruction and learner-instructor interaction. We've taken a distinctive approach to this problem, combining the power of guided instruction with the flexibility of short, focused learning experiences. Two-day, interactive, hands-on coding workshops train researchers to work with data, and have impacted over 27,500 researchers, ranging from biologists to physicists to engineers and economists. Researchers have benefited from evidence-based teaching approaches to learning data organization (spreadsheets), cleaning (OpenRefine), management (SQL), analysis and visualization (R and Python). This talk focuses on implications and growth opportunities for incorporating data science curriculum at the university level, from the perspective of The Carpentries. We explore tips and best-practices in data science curriculum development including assessment strategies, accessibility, and equity and inclusion.

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Integration of Traditional Ecological Knowledge with Big Data & Retaining Indigenous Students

Presenter: Marco Hatch, Western Washington University  

Abstract: One common barrier to STEM engagement in underserved and underrepresented communities is a feeling of disconnection from mainstream science. This attitude is rooted in a history of researchers and decision-makers collecting, analyzing and interpreting data without engaging community members as true partners and equals. Spanning this boundary between ecological research and communities impacted by environmental change is foundational to moving toward a more equitable future focused on solutions that serve under-resourced communities facing the brunt of environmental degradation and climate change. Great strides have been made toward the goals of democratizing conservation science, empowering local communities to engage with mainstream research on a level playing field. However, these initiatives are subject to a few common pitfalls such as, projects that do not fully account for the social-cultural context of the community, projects that fail to understand the foundationally different worldview of Indigenous communities. These pitfalls can lead to partnerships with the unstated goal of “making them like us”, where the actions of the partnership are structured such that the decision-making power and authority is retained within the STEM disciplines, and if community members want access to that authority, they must conform their worldview to mainstream science. We believe that spanning this boundary between local communities and mainstream science will increase social justice, increase the relevance of conservation science, and open new opportunity spaces for all involved. Central to the success of this vision are boundary spanners.

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What is big data for?

Presenters: Jennifer Balch, Earth Lab/University of Colorado-Boulder and Kirsten Rowell, University of Colorado-Boulder

Abstract: What are we actually harnessing the data revolution for? It's for humanity. Ultimately, big data should help improve people's lives and help society live more sustainably with our planet. It's not anyone's data, it's everyone's data. This makes it critical to involve, encourage, and support a diversity of people in owning the data and ultimately owning the solutions that come from that data.

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Impact of Urban Development in DC

Presenters: Edem Yevoo, University of Maryland and Travis Belote, The Wilderness Society

Abstract: As the global population continues to increase, more people are moving from rural to urban areas. In the next decades, most of the world's population will be living in urban areas. Utilizing geospatial data from the United States Geological Survey (USGS), a predictive visual model was created using geographic information systems (GIS) software. The model was used to predict the change in the District of Columbia's (DC) urban landscape over time. The use of GIS and data analysis systems hold the key to tackling current and future environmental issues. I will discuss the use of spatial data and how it can be used to impact policy, climate change, and socioeconomic conditions in our urban environments.

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Using Spatial Data and GIS for Remote Internships Through the EcologyPlus Program

Presenters: Travis Belote, The Wilderness Society, Edem Yevoo, University of Maryland, and Teresa Mourad, Ecological Society of America 

Abstract: The EcologyPlus program recruits and supports a cohort of diverse students to pursue a variety of professional development opportunities through a diverse network of organizations. The Wilderness Society, as a partner organization, hosted three EcologyPlus student interns in the fall of 2018. The internship began with a week-long trip to Montana to visit Yellowstone National Park, meet local scientists, receive a short-course on geographic information systems (GIS) and spatial data, and develop research questions. Each student developed separate but related questions requiring various spatial datasets, data management, and analytical approaches. The students completed most of the work at their home institutions throughout the fall semester of 2018. The remote internship included biweekly check-ins including “shadowing” via screenshares to work through data analysis challenges. Students presented their work during a one-hour presentation and webinar at the end of the semester. We will discuss the value of spatial data and GIS in undergraduate education and provide recommendation for a successful remote internship. Our key recommendations include spending time together in-person for a kick-off event, regular check-in meetings with video conferencing and screenshares, and developing clear deliverables (report or professional presentation) to bookend the experience.

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How to spot conspiracy theories

How to Spot COVID-19 Conspiracy Theories, authored by Stephan Lewandowsky, John Cook, Ullrich Ecker, and Sander van der Linden, looks at possible examples of COVID-19 conspiracy theories, and identifies how they illustrate the seven traits of conspiratorial thinking,

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Information is Beautiful 's take on COVID 19

An Infographic datapack of visualizations on COVID 19

Also check out Myths and Misconceptions: https://informationisbeautiful.net/visualizations/coronavirus-myths-mythconceptions/

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Expanding the Pipeline: Engaging Urban Secondary School and College Students in Science and the Environment

Presenters: Yael Wyner, City College of New York, City University of New York and Janice Koch, American University

Abstract: This speed talk describes three education projects that engage urban minority students in science and the environment. Two projects focus on secondary school ecology and evolutionary biology learning in New York City science classrooms. The third project is a new science learning and public engagement major for City College of New York undergraduate students. Each of these projects seeks to increase access to science learning and science careers. With NSF funding, we created curricular resources grounded in published scientific data to connect the daily lives of New York City high school students to ecological concepts learned in school. We also created curricular resources for New York City middle school students to help them notice the evolutionary patterns of the sidewalk trees they pass daily. We are currently designing a new undergraduate program to prepare City College graduates to deliver STEM learning at botanical gardens, museums, zoos, environmental education centers, community-based organizations, educational, and science and environmental non-profits. The new City College program is a response to the unmet need to expand the science engagement pipeline to members of underrepresented groups.

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Broadening Participation with Bioinformatics, Big Data, and Data Science

Presenter: Jason Williams, Cold Spring Harbor Laboratory

Abstract: This talk highlights challenges and opportunities surrounding bioinformatics training and aims to spark conversation reshaping the training landscape. As new methods such as machine learning/deep learning become more relevant to biology, we risk widening the intelligibility gap between the training “haves” and “have-nots.” The community has a need for extensive discussion on this topic and support for development of alternatives to classroom training that can bridge gaps between the large numbers of existing researchers who need to understand and apply data science skills, but who are unlikely to return to formal schooling. Findings by NIBLSE (pronounced “nibbles”) – Network for Integrating Bioinformatics in Life Sciences Education – revealed that 95% of faculty believe bioinformatics should be taught, but only 40% manage to do so (with clear disparities for faculty at less-resourced institutions). Input from the survey and a NIBLSE working group has also generated a set of bioinformatics competencies for undergraduate bioinformatics (Sayers et.al. 2018). A a survey of NSF-funded investigators in the biological sciences (Barone et.al. 2017) conclude that training in several areas of bioinformatics are the most unmet need for established researchers. Improving the bioinformatics curriculum opens up opportunities for broadened participation by equipping students and teachers with the skills needed for 21st century careers in STEM. Examples of CyVerse and Cold Spring Harbor DNA Learning Center programs that integrate bioinformatics, big data, and data science will illustrate effective ways to engage diverse students with in-demand skills.

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Opening Panel: Further Defining the Problem Space

The opening panel for the Bringing Conversations on Diversity, Equity, and Inclusion in Data Science to the Environmental Sciences conference included Cedric Chambers, Jump Recruits; Clyde Cristman, Virginia Department of Conservation & Recreation; Gina Helfrich, NumFOCUS; Kaitlin Stack Whitney, Rochester Institute of Technology; and James Rattling Leaf, Sr., Rattling Leaf Consulting, LLC.

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What is the problem we are trying to solve?

Presentation given by Alycia Crall (National Ecological Observatory Network) to set the stage for the 3-day conference on diversity, equity, and inclusion in the environmental data sciences.

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At the Crossroads: Black Faces, White Spaces, and Re-thinking Green

Opening plenary presentation given by Dr. Carolyn Finney on April 2, 2019.

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AGU's Ethics, Diversity, and Inclusion Program: 2019 Summary

American Geophysical Union's Ethics, Diversity, and Inclusion program report for 2019.

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REMNet Newsletter March 2020

This the the first issue of our monthly newsletter! If you have any news you would like to share with the rest of the community, don't hesitate to let us know :)
 

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REMNet Newsletter April 2020

This is our second issue of the monthly newsletter! If you have any news you would like to share with the rest of the community, don't hesitate to let us know :)

We hope that during these times you and your loved ones are safe and healthy!

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COVID 19 Time

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Trouble Shooting Online Instruction

Many of us are using new tools, approaches, and environments to continue engaging our students in high quality instruction while maintaining social distance.
Join us for a Q&A session with a panel of experienced online instructors to trouble-shoot issues and barriers you and your students are encountering and potential solutions and work-arounds.

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Online with LSE: Transitioning to online instruction

This session of Online with LSE will feature a discussion with educators who have experience teaching online and working with faculty to transition to online instruction.

Panelists
Andrew Bouwma, Instructor in Biology at Oregon State University, experienced online course designer and instructor, including award-winning online lab instruction
Cynthia Brame, Associate Director of the Vanderbilt University Center for Teaching and Senior Lecturer in Biological Sciences, who has experience working with faculty to transition to online instruction
Jim Hewlett, Professor at Finger Lakes Community College and experienced online course designer and instructor
Erika Offerdahl, Associate Professor of Molecular Biosciences and experienced online course designer and instructor

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COVID-19 Data Science Resources

"The Academic Data Science Alliance is working with partners to pull together data and data science resources related to the COVID-19 pandemic. This is a living list of resources and we welcome additions, suggestions, and collaborations. Please send additions, corrections, comments, and suggestions to us using this feedback form.

Please keep suggestions limited to research and data resources, avoiding opinion pieces and teaching resources. 

Note that the resources listed here are provided as-is. Use your professional judgement and best practices to vet these resources before you use them for research and scientific communications."

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Slowly Letting People Back In

A PBS Newshour: Student Reporting Labs Interview 

"West Ranch High School student reporter Madi Marks interviews University of Pittsburgh professor and epidemiologist Dr. Wilbert Van Panhuis on how he's collecting data on the coronavirus and how to combat it for our #SRLAsks series."

Quick intro to epidemiology and modeling and a peek into career pathways in this area.

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Making it RAIN: Using Remotely Accessible Instruments in Nanotechnology to Enhance High School Science Courses

Min, A., Ashcroft, J., Monroy, J., Wolf, V., Lee, C., Horton, J., Ehrmann, R., Rodriguez, B. 2019

The Remotely Accessible Instruments in Nanotechnology (RAIN) Network is a conglomerate of nineteen community colleges, four-year universities and high school sites that aims to enhance STEM learning by bringing advanced technologies to K-12 education. RAIN provides free remote access to instruments such as Scanning Electron, Atomic Force and Transmission E ectron Microscopes, as well as Energy Dispersive and Infrared Spectroscopy.

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Kristin Jenkins onto Labs

Remotely Accessible Experiments for Use in K-12 Education

Jared Ashcroft and William Miller

RAIN has been developing science labs that can be used in conjunction with remote access instruments to expose K-12 classes to modern experimentation that will help fulfill requirements of NGSS. Currently, RAIN has access to seven experiments that can utilize with remote access available on its website (www.nano4me.org/remoteaccess).

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Kristin Jenkins onto Labs

Cultivating Mars: A project-based learning lab analyzing an oxygen based redox reaction in order to design an oxygen-rich environment on the Red Planet

Ashcroft, J.M., Min, A., Bojanini, I., Hacopian, M., Schroeder, K., Cakmak, A.O., Rodriguez, B. 2018. Journal of Laboratory Chemical Education

In a series of activities/labs, designed in a building block approach, whereas each subsequent lab builds into the next, students will explore the reactivity and production of oxygen in various biological and chemical systems.  Use of remote access technology to a Scanning Electron Microscope (SEM) with elemental analysis capabilities allows students to investigate their oxygen reaction via formation of iron oxide.

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Accessibility and Universal Design of Online Meetings

With the emergence of online conferencing tools and the flexibility required for effectively working remotely, more and more meetings are being held online. Organizers generally have the goal that everyone who attends their meetings can fully participate and access information. Using a handful of strategies, this goal can be met.

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Alycia Crall onto Other Relevant Resources

Genomic epidemiology of novel coronavirus

A phylogeny shows evolutionary relationships of hCoV-19 (or SARS-CoV-2) viruses from the ongoing novel coronavirus COVID-19 pandemic

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Lisa Scheifele onto Coronavirus

How coronavirus tests work

Video from Nova on how the tests work.

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Lisa Scheifele onto Coronavirus

ISCB Education and Training Resources

Our Vision is to see high quality computational biology education and training accessible to all interested communities across the world, and instilled in all life science-related educational programs.

Our Mission is to promote worldwide education and training in computational biology by providing guidance and support for educational resources and community activities.

The information contained within this section covers two general areas:

  1. World-wide educational and training resources for all levels from novices to advanced practitioners of computational biology
  2. Resources that enhance learning and preparation geared towards a career in computational biology

In addition to the content generated by ISCB Education, we also solicit and collect input and information from the larger computational biology community to be made available through these pages.

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The Jackson Laboratory Courses and Workshops

The Genomic Education team at The Jackson Laboratory is committed to creating diverse and inclusive educational programs where all students, employees and visitors feel valued and are empowered to participate in our mission to improve human health though genomics research, scientific resources and education. We believe human diversity is an essential ingredient for empowering the global biomedical community, and therefore our programs should reflect, embrace and celebrate the diversity of our world ... JAX's programs for high school and undergraduate students and teachers predate the founding of the Jackson Laboratory by six years. Including our flagship Summer Student Program, JAX offers opportunities for academic year research, teacher professional development, and the Maine State Science Fair.

Courses are designed to impart knowledge through intensive lectures, hands-on training and informal interactions. Workshops offer extensive hands-on training, teaching participants how to perform specific techniques, interspersed with lectures or seminars.

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GOBLET

This portal allows you to browse our course pages and training materials, to download content of interest and/or to upload course pages and training materials.

NOTE: this page has not been updated for more than 4 months.

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Galaxy Training Materials

This web site is a gateway for lessons, tutorial, and examples of using Galaxy for genomics education and analysis. Among other things, links to tutorials for the following subjects are provided:


Events with Galaxy-related content (includes virtual events)

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Assignment for Coronavirus dianostic kit design

The homework assigned through the files follows a presentation on qPCR. The goal of the assignment is for the students to get primer pairs that do not bind to human DNA or the SARS Coronavirus that caused the 2003 epidemic. It is easy to assess through Primer-Blast or the UCSC in-silico PCR tool (links provided above).

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Nik Tsotakos onto Coronavirus

In-classroom activity for genome alignment of different strains of viruses in the Coronaviridae family

This is an activity that took place in an Advanced Genetics class that meets in a computer lab. The activity aims to construct a phylogenetic tree of different Coronaviruses, including a few strains of SARS-CoV2. The sequences were pulled from the Virus Pathogen Database and Genbank. Since the activity initially took place in mid-February, there are a lot more available sequences in the databases, while at least one of the sequences included has been retracted. The homework in the end is another application of the skillset the students acquired through the activity, and can be modified based on the course's objectives.

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Nik Tsotakos onto Coronavirus

Cases from the National Center for Case Study Teaching in Science

NCCSTS requires a $25 annual subscription for individuals.  Materials are peer reviewed, and include student handouts and teacher materials.  We are sharing information about recent cases published on COVID19 from this organization:

"COVID-19: Where Did You Come From, Where Did You Go?” by authors from North Carolina State University: Stefanie H. Chen, Carlos C. Goller, and Melissa C. Srougi

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1125&id=1125

"Put to the Test: RT-PCR and Antibody Detection Diagnostic Tools for COVID-19 ” by a team of authors from Brandeis University:  Melissa S. Kosinski-Collins, Lindsay Mehrmanesh, Jessie Cuomo and Kene N. Piasta.

Fatally Flawed? Early Genetic Testing for the COVID-19 Virus” by Amy C. Groth, Department of Biology, Eastern Connecticut State University

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1123&id=1123

Social Distancing in the Midst of COVID-19” is by Jason C. Cochrane, Science Department, Mountain Vista High School, Highlands Ranch, CO. 

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1113&id=1113

 “Pandemic Pandemonium: Why Can’t We Just Treat COVID-19?” by a team of authors from Brandeis University:  Melissa S. Kosinski-Collins, Lindsay Mehrmanesh, Jessie Cuomo and Kene N. Piasta.

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1114&id=1114 

"Coronavirus Quandaries for Patients with Cardiovascular Disease” by Janine Bartholomew, Department of Biology, Carlow University, Pittsburgh, PA

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1121&id=1121

Where’s the Evidence? Confronting Public Panic About COVID-19” by Laura Pickell, Department of Biology, Cégep Heritage College, Gatineau, QC, Canada

https://sciencecases.lib.buffalo.edu/collection/detail.html?case_id=1120&id=1120

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Kristin Jenkins onto COVID-19/Public Health

Teaching Effectively Online from CIRTL

The CIRTL Network is providing various trainings to assist in the sudden transition to online learning as campuses close to slow the spread of COVID-19. These trainings are offered both as synchronous online workshops and in recorded modules on YouTube.

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How UDL Can Support Your Transition to Online Teaching

Crowd-sourced table of online teaching practices that align to the UDL guidelines specific to the affective network

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Synthetic Organisms Simplify Biology

Review article from 2019

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Lisa Scheifele onto Creating synthetic genomes

A semi-synthetic organism that stores and retrieves increased genetic information

Creation of a semi-synthetic organism whose DNA harbours two additional letters that form a third, unnatural base pair.

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Lisa Scheifele onto Creating synthetic genomes

Genome-wide inactivation of Retroviruses

Demonstration of inactivation of porcine endogenous retroviruses using CRISPR technology to enable porcine-to-human xenotransplantation of organs.

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Lisa Scheifele onto Creating synthetic genomes

Engineering bacteria for diagnostic and therapeutic applications

A review article on designing bacteria for diagnostics and therapeutics

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Lisa Scheifele onto Creating synthetic genomes

Total synthesis of Escherichia coli with a recoded genome

A synthetic E. coli genome that has been designed to use only 61 of the 64 available codons. Includes webinar from Genewiz on design and assembly of the genome.

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Lisa Scheifele onto Creating synthetic genomes

Technological challenges and milestones for writing genomes

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Lisa Scheifele onto Creating synthetic genomes

Synthetic Generation of Influenza Vaccine Viruses for Rapid Response to Pandemics

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Lisa Scheifele onto Creating synthetic genomes

Synthetic Reconstruction of Zoonotic and Early Human Severe Acute Respiratory Syndrome Coronavirus Isolates That Produce Fatal Disease in Aged Mice

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Lisa Scheifele onto Coronavirus

Standard and AEGIS nicking molecular beacons detect amplicons fromthe Middle East respiratory syndrome coronavirus

Use of synthetic biology to improve the signal-to-noise ratio in coronavirus diagnostics

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Lisa Scheifele onto Coronavirus

Should scientists infect healthy people with the coronavirus to test vaccines?

Perspectives article discussing important ethical dilemmas in developing coronavirus vaccines.

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Lisa Scheifele onto Coronavirus

Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform

Use of synthetic genomics to clone and synthesize the Covid-19 genome. Preprint from Biorxiv.

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Lisa Scheifele onto Coronavirus

Race to find COVID-19 treatments accelerates

Review article on different potential treatment strategies and where in the viral life cycle intervention is possible.

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Lisa Scheifele onto Coronavirus

Mechanisms of Zoonotic Severe Acute Respiratory Syndrome Coronavirus Host Range Expansion in Human Airway Epithelium

Using synthetic biology, the authors engineered the spike protein (S) from an animal strain and used in vitro evolution to understand how it could adapt to replicate well in human cells.

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Lisa Scheifele onto Coronavirus

Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins

One of the first papers sequencing Covid-19 viruses and identifying its potential animal source

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Lisa Scheifele onto Coronavirus

Identification of the Mechanisms Causing Reversion to Virulence in an Attenuated SARS-CoV for the Design of a Genetically Stable Vaccine

Paper investigating the development of safe and effective vaccines against SARS coronavirus

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Lisa Scheifele onto Coronavirus

Simulator for the spread of coronavirus

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Lisa Scheifele onto Coronavirus

What This Chart Actually Means for COVID-19

A video from PBS's It's Okay to Be Smart explaining the spread of coronaviruses, social distancing, and what it means to "flatten the curve"

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Lisa Scheifele onto Coronavirus

Exponential growth and epidemics

Highly useful explainer video on exponential growth and its contribution to epidemics

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Lisa Scheifele onto Coronavirus

Dr. Anthony Fauci on the Daily Show

Accurate answers to common questions about coronavirus

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Lisa Scheifele onto Coronavirus

Detecting respiratory viral RNA using expanded genetic alphabets and self-avoiding DNA

Improved methods to detect multiple respiratory viruses with one very specific assay

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Lisa Scheifele onto Coronavirus

MAA Emergency Online Teaching Toolkit

This Google doc has an abundance of tools, video tips, and information about how to transition to emergency teaching online.

MAA is the Mathematical Association of America and is the professional society in the US devoted primarily to the support of faculty for undergraduate instruction.

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Carrie Diaz Eaton onto Tools for teaching remotely

Fred Hutch's List of science papers to read about the coronavirus

Fred Hutchinson Cancer Research Center's list of science papers you should be reading about the coronavirus: Amid the thousands of research publications on COVID-19, here are the ones they are reading

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Kristine Grayson onto COVID-19/Public Health

SEIR on networks with Github and Tweet thread

This is a python package for exploring SEIR models on social networks. The first link is to a Twitter thread where the use and some significant results are explained.

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Carrie Diaz Eaton onto COVID-19/Public Health

Dr. Kestler’s Coronavirus Video Series

Dr. Harry Kestler at LCCC keeps us informed about the coronavirus and how we can all work together to slow the spread of COVID-19 in this series of daily videos about various aspects of the pandemic: https://www.lorainccc.edu/security/dr-kestlers-coronavirus-video-series/

Prior to his position at LCCC, Kestler held faculty positions at the Lerner Medical College of the Cleveland Clinic and the department of Microbiology and Molecular Genetics at Harvard Medical School.

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Kristin Jenkins onto COVID-19/Public Health

Post Test 1

Testing 3

 

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Nathan Snodgrass onto Test 3

Post Test 3

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Nathan Snodgrass onto Test 2

Post Test 1

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Nathan Snodgrass onto Test 2

Post Test 2

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Nathan Snodgrass onto Test 2

The mathematics of COVID-19

By Dr  Kamuela Yong

Helps readers interpret various models and statistics around COVID-19. Written at the introductory level, could be used for high school or introductory undergraduate.

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Carrie Diaz Eaton onto COVID-19/Public Health

Keyboard shortcuts for Google's suite of online tools and how to enable them

The use of Google’s tools for collaborative assignment preparation is increasingly common in online courses. The G Suite also offers conferencing capability that some instructors are using for synchronous online meetings.

All of these tools have built-in hotkeys and keyboard shortcuts that enable them to be used completely mouse-free. However, they are often not visible or available by default. The linked page provides lists of these hotkeys and instructions to enable them for each tool.

The ability to use the keyboard is important for students and instructors who cannot or choose not to use a mouse, as well as those who use screen readers and other forms of assistive technology.

 

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Hotkeys and keyboard shortcuts for Zoom desktop clients (Windows/Mac?Linux)

Many instructors are suddenly using the Zoom video conference platform to hold synchronous class meetings or virtual office hours with individual students. This page contains a list of hotkeys and keyboard shortcuts for the Zoom desktop clients, as well as instructions for editing them.

This will be a useful reference for any students or instructors who cannot or prefer not to use a mouse, those who use screen reading software, and anyone else who prefers to customize how they interact with this communication tool.

 

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Zoom backgrounds - be where you want to be!

You've seen your friends and colleagues lounging in space, shooting the rapids, or in some other enviable location.  You, too, can travel to foreign locations while sitting in your office on another zoom call.  

"How to" information from zoom: https://support.zoom.us/hc/en-us/articles/210707503-Virtual-Background

Backgrounds: https://www.zoomvirtualbackgrounds.com/

 

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Kristin Jenkins onto Humor

COVID 19 Data Pack

Several graphics around COVID19 and the pandemic, with readings at the bottom of the page and access to underlying data.

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Kristin Jenkins onto COVID-19/Public Health

Information is Beautiful

Incredible visualizations of data on a variety of topics, often with underlying data available.  Ideal for prompting discussions about topics, data visualization and data analysis.

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Kristin Jenkins onto Data Science